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Scientific Publications

Peer-reviewed journal publications

A compound memristive synapse model for statistical learning through STDP in spiking neural networks.

Johannes Bill & Robert Legenstein (TUGRAZ).

Published in Frontiers in Neuroscience, 2014 December 16, Open Access.

 

Great Expectations: Using Whole-Brain Computational Connectomics for Understanding Neuropsychiatric Disorders.

G. Deco (UPF) and M.L. Kringelbach.

Published in Neuron, 2014 December 3.

 

Generalized cable formalism to calculate the magnetic field of single neurons and neuronal populations.

Claude Bedard & Alain Destexhe (CNRS UNIC).

Published in Physical Review E, 2014 October 28.

 

Ensembles of Spiking Neurons with Noise Support Optimal Probabilistic Inference in a Dynamically Changing Environment.

Robert Legenstein (TUGRAZ) & Wolfgang Maass (TUGRAZ)

Published in PLoS Computational Biology, 2014 October 23, Open Access.

 

NEVESIM: Event-Driven Neural Simulation Framework with a Python Interface.

D. Pecevski, D. Kappel and Z. Jonke (TUGRAZ).

Published in Frontiers in Neuroinformatics, 2014 August 14, Open Access.

 

Spike-timing prediction in cortical neurons with active dendrites.

Richard Naud, Brice Bathellier & Wulfram Gerstner (EPFL).

Published in Frontiers in Computational Neuroscience, 2014 August 13, Open Access.

 

Mean-field formulation of Maxwell equations to model electrically inhomogeneous and isotropic media.

Claude Bedard & Alain Destexhe (CNRS UNIC).

Published in Journal of Electromagnetic Analysis and Applications, 2014 July 15, Open Access.

 

How Local Excitation–Inhibition Ratio Impacts the Whole Brain Dynamics.

Gustavo Deco  (UPF), Adrian Ponce-Alvarez, Patric Hagmann, Gian Luca Romani, Dante Mantini & Maurizio Corbetta.

Published in The Journal of Neuroscience, 2014 June 4, Open Access.

 

Noise as a resource for computation and learning in networks of spiking neurons.

Wolfgang Maass (TUGRAZ).

Published in Special Issue of the Proceedings of the IEEE on "Engineering Intelligent Electronic Systems based on Computational Neuroscience", 2014 April 14.

 

Neural mechanisms of self-location.

Caswell Barry & Neil Burgess (UCL).

Published in Current Biology, 2014 April 14, Open Access.

 

A hybrid oscillatory interference / continuous attractor network model of grid cell firing.

Daniel Bush & Neil Burgess (UCL).

Published in The Journal of Neuroscience, 2014 April 2, Open Access.

 

What do grid Cells Contribute to Place Cell Firing?

Daniel Bush, Caswell Barry & Neil Burgess (UCL).

Published in Trends in Neurosciences, 2014 March, Open Access.

Peer-reviewed journal publications

Neural Network Model of Memory Retrieval

Stefano Recanatesi , Mikhail Katkov (WIS), Sandro Romani  & Misha Tsodyks (WIS)

Published in Frontiers in Computational Neuroscience, 2015 December 17, Open Access

 

Dendritic and Axonal Architecture of Individual Pyramidal Neurons across Layers of Adult Human Neocortex

Hemanth Mohan, Matthijs B. Verhoog, Keerthi K. Doreswamy, Guy Eyal (HUJI), Romy Aardse, Brendan N. Lodder, Natalia A. Goriounova, Boateng Asamoah, A.B. Clementine B. Brakspear, Colin Groot, Sophie van der Sluis, Guilherme Testa-Silva, Joshua Obermayer, Zimbo S.R.M. Boudewijns, Rajeevan T. Narayanan, Johannes C. Baayen, Idan Segev (HUJI), Huibert D. Mansvelder & Christiaan P.J. de Kock

Published in Cerebral CORTEX, 2015 August 28, Open Access

 

Learning Spatiotemporally Encoded Pattern Transformations in Structured Spiking Neural Networks

Brian gardner (SURREY), Ioana Sporea & André Grüning (SURREY)

Published in Neural Computation, 2015 November 24

 

The Encoding of Decision Difficulty and Movement Time in the Primate Premotor Cortex

Marina Martinez-Garcia, Andrea Insabato, Mario Pannunzi, Jose L. Pardo-Vazquez, Carlos Acuña & Gustavo Deco (UPF)

Published in PLoS Computational Biology, 2015 November 10, Open Access

 

The Cognitive Architecture of Spatial Navigation: Hippocampal and Striatal Contributions

Fabian Chersi (UCL) & Neil Burgess (UCL)

Published in Neuron, 2015 October 7, Open Access

 

The Rediscovery of Slowness: Exploring the Timing of Cognition

Morten L. Kringelbach, Anthony R. McIntosh, Petra Ritter, Viktor K. Jirsa (AMU), and Gustavo Deco (UPF)

Published in Trends in Cognitive Sciences, 2015 October

 

Non-stationary filtered shot noise processes and applications to neuronal membranes.

Marco Brigham & Alain Destexhe (CNRS UNIC)

Published in Physical Review E, 2015 June 3.

 

Efficient simulation of optical nonlinear cavity circuits.

Thomas Van Vaerenbergh, Martin Fiers, Joni Dambre (UGENT)  & Peter Bienstman

Published in Optical and Quantum Electronics, 2015 June.

 

On the effects on cortical spontaneous activity of the symmetries of the network of pinwheels in visual area V1.

Romain Veltz (INRIA), Pascal Chossat & Olivier Faugeras (INRIA)

Published in Journal of Mathematical Neuroscience, 2015 May 30, Open Access

 

ViSAPy: A Python tool for biophysics-based generation of virtual spiking activity for evaluation of spike-sorting algorithms.

Espen Hagen, Torbjørn V. Ness (NMBU), Amir Khosrowshahi, Christina Sørensen, Marianne Fyhn, Torkel Hafting, Felix Franke & Gaute T. Einevoll (NMBU)

Published in Journal of Neuroscience Methods, 2015 April 30, Open Access.

 

Diverse synaptic plasticity mechanisms orchestrated to form and retrieve memories in spiking neural networks.

Friedemann Zenke, Everton J. Agnes, & Wulfram Gerstner (EPFL).

Published in Nature Communications, 2015 April 21, Open Access.

 

Modelling and analysis of electrical potentials recorded in microelectrode arrays (MEAs).

Torbjørn V. Ness (NMBU), H. Chaitanya Chintaluri, Jan Potworowski, Szymon Łęski, Helena Głąbska, Daniel K. Wójcik, & Gaute T. Einevoll (NMBU).

Published in Neuroinformatics, 2015 March 31, Open Access.

 

Trainable hardware for dynamical computing using error backpropagation through physical media.

Michiel Hermans, Michaël Burm, Thomas Van Vaerenbergh, Joni Dambre (UGENT) & Peter Bienstman.

Published in Nature Communications, 2015 March 24, Open Access.

 

Memristor models for machine learning.

Juan Pablo Carbajal, Joni Dambre (UGENT), Michiel Hermans, & Benjamin Schrauwen (UGENT)

Published in Neural Computation, 2015 March

 

What Can Neuromorphic Event-Driven Precise Timing Add to Spike-Based Pattern Recognition?

Himanshu Akolkar, Cedric Meyer, Xavier Clady, Olivier Marre (UPMC), Chiara Bartolozzi, Stefano Panzeri & Ryad Benosman

Published in Neural Computation, 2015 March.

 

Probabilistic inference in discrete spaces can be implemented into networks of LIF neurons.

D. Probst, M. A. Petrovici, I. Bytschok, J. Bill, D. Pecevski (TUGRAZ) J. Schemmel & KH Meier (UHEI)

Published in Frontiers in Computational Neuroscience, 2015 February 12, Open Access.

 

Gain modulation of synaptic inputs by network state in auditory cortex in vivo.

Ramon Reig, Yann Zerlaut, Ramiro Vergara, Alain Destexhe (CNRS UNIC) & M. Sanchez-Vives

Published in The Journal of Neuroscience, 2015 February 11, Open Access

 

Peer-reviewed conference proceedings

Population Density Techniques for Modeling Neural Populations.

Marc de Kamps, Y. M. Lai and E. Duffin (LEEDS).

ICMNS 2015 (accepted abstract), June.

 

On-Line Unsupervised Terrain Classification for a Compliant Tensegrity Robot using a Mixture of ESNs.

Joni Dambre, Jeroen Burms and Ken Caluwaerts (UGENT).

Accepted for publication in the proceedings of ICRA, May 26-27.

Peer-reviewed journal publications

Local recording of biological magnetic fields using Giant Magneto Resistance-based microprobes

Francesca Barbieri, Vincent Trauchessec, Laure Caruso, Josué Trejo-Rosillo, Bartosz Telenczuk (CNRS), Elodie Paul, Thierry Bal, Alain Destexhe (CNRS), Claude Fermon, Myriam Pannetier-Lecoeur & Gilles Ouanounou

Published in Nature scientific reports, 2016 December 19, Open Access

 

Functional complexity emerging from anatomical constraints in the brain: the significance of network modularity and rich-clubs

Gorka Zamora-López (UPF), Yuhan Chen, Gustavo Deco (UPF), Morten L. Kringelbach & Changsong Zhou

Published in Nature scientific reports, 2016 December 5, Open Access

 

How do parcellation size and short-range connectivity affect dynamics in large-scale brain network models?

Timothée Proix, Andreas Spiegler (AMU), Michael Schirner, Simon Rothmeier, Petra Ritter, Viktor K. Jirsa (AMU)

Published in NeuroImage, 2016 November 15

 

Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue

Geir Halnes, Tuomo Mäki-Marttunen, Daniel Keller, Klas H. Pettersen, Ole A. Andreassen, Gaute T. Einevoll (NMBU)

Published in PLoS Computational Biology, 2016 November 7, Open Access

 

[Re] Cellular and Network Mechanisms of Slow Oscillatory Activity (<1 Hz) and Wave Propagations in a Cortical Network Model

Andrei Maksimov, Sacha J. van Albada (JUELICH), and Markus Diesmann (JUELICH)

Published in ReScience, 2016 October 17, Open Access

 

Structure and Topology Dynamics of Hyper-Frequency Networks during Rest and Auditory Oddball Performance

Viktor Müller, Dionysios Perdikis, Timo von Oertzen, Rita Sleimen-Malkoun, Viktor Jirsa (AMU)  and Ulman Lindenberger

Published in Frontiers in Computational Neuroscience, 2016 October 17, Open Access

 

Selective activation of resting state networks following focal stimulation in a connectome-based network model of the human brain

Andreas Spiegler (AMU), Enrique C.A. Hansen, Christophe Bernard, Anthony R. McIntosh and Viktor K. Jirsa (AMU)

Published in eNeuro, 2016 September 21, Open Access

 

Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations

Ekaterina Brocke, Upinder S. Bhalla, Mikael Djurfeldt, Jeanette Hellgren Kotaleski (KTH) and Michael Hanke

Published in Frontiers in Computational Neuroscience, 2016 September 12, Open Access

 

Supervised Learning in Spiking Neural Networks for Precise Temporal Encoding

Brian Gardner (SURREY), André Grüning (SURREY)

Published in PLoS One, 2016 August 17, Open Access

 

High-frequency oscillations in human and monkey neocortex during the wake-sleep cycle

Michel Le Van Quyen, Lyle Muller, Bartosz Telenczuk (CNRS), Eric Halgren, Sydney S. Cash, Nicholas G. Hatsopoulos,

Nima Dehghani, and Alain Destexhe (CNRS)

Published in PNAS, 2016 August 16

 

Synchronous Spike Patterns in Macaque Motor Cortex during an Instructed-Delay Reach-to-Grasp Task

Emiliano Torre, Pietro Quaglio (JUELICH),  Michael Denker(JUELICH), Thomas Brochier, Alexa Riehle, and Sonja Grün (JUELICH)

Published in The Journal of Neuroscience, 2016 August 10, Open Access

 

Resting state brain dynamics and its transients: a combined TMS-EEG study

Mireille Bonnard, Sophie Chen, Jérôme Gaychet, Marcel Carrere, Marmaduke Woodman, Bernard Giusiano & Viktor Jirsa (AMU)

Published in Nature scientific reports, 2016 August 4, Open Access

 

Learning maximum entropy models from finite-size data sets: A fast data-driven algorithm allows sampling from the posterior distribution

Ulisse Ferrari (UPMC)

Published in Physical Review E, 2016 August 1

 

ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains

Emiliano Torre, Carlos Canova (JUELICH), Michael Denker (JUELICH), George Gerstein, Moritz Helias, Sonja Grün (JUELICH)

Published in PLoS Computational Biology, 2016 July 15, Open Access

 

Hybrid scheme for modeling local field potentials from point-neuron networks

Espen Hagen, David Dahmen, Maria L. Stavrinou, Henrik Lindén, Tom Tetzlaff, Sacha J. van Albada (JUELICH), Sonja Grün (JUELICH), Markus Diesmann (JUELICH), Gaute T. Einevoll (NMBU)

Published in Cerebral CORTEX, 2016 July 12, Open Access

 

Heterogeneity of time delays determines synchronization of coupled oscillators

Spase Petkoski (AMU), Andreas Spiegler (AMU), Timothée Proix, Parham Aram, Jean-Jacques Temprado , and Viktor K. Jirsa (AMU)

Published in Physical Review E, 2016 July 11

 

Heterogeneous firing rate response of mice layer V pyramidal neurons in the fluctuation-driven regime.

Y. Zerlaut, B.Telenczuk (CNRS), C.Deleuze, T.Bal, G.Ouanounou and A. Destexhe (CNRS)

Published in The Journal of Physiology, 2016 July 1

 

Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol

Heidi Teppola, Jertta-Riina Sarkanen, Tuula O. Jalonen and Marja-Leena Linne (TUT)

Published in Neurochemichal Research, 2016 April, Open Access

 

Functional Mechanisms of Recovery after Chronic Stroke: Modeling with the Virtual Brain

Maria Inez Falcon, Jeffrey D. Riley,  Viktor Jirsa (AMU),  Anthony R. McIntosh,  E. Elinor Chen,  and Ana Solodkin

Published in eNeuro, 2016 March 23, Open Access

 

Dynamic Balance of Excitation and Inhibition in Human and Monkey Neocortex

Nima Dehghani, Adrien Peyrache, Bartosz Telenczuk (CNRS), Michel Le Van Quyen, Eric Halgren, Sydney S. Cash, Nicholas G. Hatsopoulos & Alain Destexhe (CNRS)

Published in Nature scientific reports, 2016 March 16, Open Access

 

Estimation of Directed Effective Connectivity from fMRI Functional Connectivity Hints at Asymmetries of Cortical Connectome.

Matthieu Gilson, Ruben Moreno-Bote, Adrián Ponce-Alvarez, Petra Ritter, Gustavo Deco (UPF)

Published in PLoS Computational Biology, 2016 March 16, Open Access

 

Intracellular Impedance Measurements Reveal Non-ohmic Properties of the Extracellular Medium around Neurons.

Jean-Marie Gomes, Claude Bédard, Silvana Valtcheva, Matthew Nelson, Vitalia Khokhlova, Pierre Pouget, Laurent Venance, Thierry Bal and Alain Destexhe (CNRS)

Published in Biophysical Journal, 2016 January 5, Open Access

Peer-reviewed journal publications

The Virtual Epileptic Patient: Individualized whole-brain models of epilepsy spread

V.K. Jirsa (AMU), T. Proix, D. Perdikis, M.M. Woodman, H. Wang, J. Gonzalez-Martinez, C. Bernard, C. Bénar, M. Guye, P. Chauvel, F. Bartolomei 

Published in NeuroImage, 2017 January 15, Open Access

 

Multiple Choice Neurodynamical Model of the Uncertain Option Task

Andrea Insabato, Mario Pannunzi, Gustavo Deco (UPF)

Published in PLoS Computational Biology, 2017 January 11, Open Access

 

Local field potentials primarily reflect inhibitory neuron activity in human and monkey cortex

Bartosz Telenczuk (CNRS), Nima Dehghani, Michel Le Van Quyen, Sydney S Cash, Eric Halgren, Nicholas G Hatsopoulos & Alain Destexhe (CNRS)

Published in Nature scientific reports, 2017 January 11, Open Access