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Scientific Publications

Peer-reviewed journal publications

A compound memristive synapse model for statistical learning through STDP in spiking neural networks.

Johannes Bill & Robert Legenstein (TUGRAZ)

Published in Frontiers in Neuroscience, 2014 December 16


Great Expectations: Using Whole-Brain Computational Connectomics for Understanding Neuropsychiatric Disorders.

G. Deco (UPF) and M.L. Kringelbach

Published in Neuron, 2014 December 3


Generalized cable formalism to calculate the magnetic field of single neurons and neuronal populations.

Claude Bedard & Alain Destexhe (CNRS)

Published in Physical Review E, 2014 October 28


Ensembles of Spiking Neurons with Noise Support Optimal Probabilistic Inference in a Dynamically Changing Environment.

Robert Legenstein (TUGRAZ) & Wolfgang Maass (TUGRAZ)

Published in PLoS Computational Biology, 2014 October 23


NEVESIM: Event-Driven Neural Simulation Framework with a Python Interface.

D. Pecevski, D. Kappel and Z. Jonke (TUGRAZ).

Published in Frontiers in Neuroinformatics, 2014 August 14


Spike-timing prediction in cortical neurons with active dendrites.

Richard Naud, Brice Bathellier & Wulfram Gerstner (EPFL)

Published in Frontiers in Computational Neuroscience, 2014 August 13


Mean-field formulation of Maxwell equations to model electrically inhomogeneous and isotropic media.

Claude Bedard & Alain Destexhe (CNRS)

Published in Journal of Electromagnetic Analysis and Applications, 2014 July 15


How Local Excitation–Inhibition Ratio Impacts the Whole Brain Dynamics.

Gustavo Deco  (UPF), Adrian Ponce-Alvarez, Patric Hagmann, Gian Luca Romani, Dante Mantini & Maurizio Corbetta

Published in The Journal of Neuroscience, 2014 June 4


Noise as a resource for computation and learning in networks of spiking neurons.

Wolfgang Maass (TUGRAZ)

Published in Special Issue of the Proceedings of the IEEE on "Engineering Intelligent Electronic Systems based on Computational Neuroscience", 2014 April 14


Neural mechanisms of self-location.

Caswell Barry & Neil Burgess (UCL)

Published in Current Biology, 2014 April 14


A hybrid oscillatory interference / continuous attractor network model of grid cell firing.

Daniel Bush & Neil Burgess (UCL)

Published in The Journal of Neuroscience, 2014 April 2


What do grid Cells Contribute to Place Cell Firing?

Daniel Bush, Caswell Barry & Neil Burgess (UCL)

Published in Trends in Neurosciences, 2014 March


Peer-reviewed journal publications

Neural Network Model of Memory Retrieval

Stefano Recanatesi , Mikhail Katkov (WIS), Sandro Romani  & Misha Tsodyks (WIS)

Published in Frontiers in Computational Neuroscience, 2015 December 17


Dendritic and Axonal Architecture of Individual Pyramidal Neurons across Layers of Adult Human Neocortex

Hemanth Mohan, Matthijs B. Verhoog, Keerthi K. Doreswamy, Guy Eyal (HUJI), Romy Aardse, Brendan N. Lodder, Natalia A. Goriounova, Boateng Asamoah, A.B. Clementine B. Brakspear, Colin Groot, Sophie van der Sluis, Guilherme Testa-Silva, Joshua Obermayer, Zimbo S.R.M. Boudewijns, Rajeevan T. Narayanan, Johannes C. Baayen, Idan Segev (HUJI), Huibert D. Mansvelder & Christiaan P.J. de Kock

Published in Cerebral CORTEX, 2015 August 28


Learning Spatiotemporally Encoded Pattern Transformations in Structured Spiking Neural Networks

Brian gardner (SURREY), Ioana Sporea & André Grüning (SURREY)

Published in Neural Computation, 2015 November 24


The Encoding of Decision Difficulty and Movement Time in the Primate Premotor Cortex

Marina Martinez-Garcia, Andrea Insabato, Mario Pannunzi, Jose L. Pardo-Vazquez, Carlos Acuña & Gustavo Deco (UPF)

Published in PLoS Computational Biology, 2015 November 10


The Cognitive Architecture of Spatial Navigation: Hippocampal and Striatal Contributions

Fabian Chersi (UCL) & Neil Burgess (UCL)

Published in Neuron, 2015 October 7


The Rediscovery of Slowness: Exploring the Timing of Cognition

Morten L. Kringelbach, Anthony R. McIntosh, Petra Ritter, Viktor K. Jirsa (AMU), and Gustavo Deco (UPF)

Published in Trends in Cognitive Sciences, 2015 October


Non-stationary filtered shot noise processes and applications to neuronal membranes.

Marco Brigham & Alain Destexhe (CNRS)

Published in Physical Review E, 2015 June 3


Efficient simulation of optical nonlinear cavity circuits.

Thomas Van Vaerenbergh, Martin Fiers, Joni Dambre (UGENT)  & Peter Bienstman

Published in Optical and Quantum Electronics, 2015 June


On the effects on cortical spontaneous activity of the symmetries of the network of pinwheels in visual area V1.

Romain Veltz (INRIA), Pascal Chossat & Olivier Faugeras (INRIA)

Published in Journal of Mathematical Neuroscience, 2015 May 30


ViSAPy: A Python tool for biophysics-based generation of virtual spiking activity for evaluation of spike-sorting algorithms.

Espen Hagen, Torbjørn V. Ness (NMBU), Amir Khosrowshahi, Christina Sørensen, Marianne Fyhn, Torkel Hafting, Felix Franke & Gaute T. Einevoll (NMBU)

Published in Journal of Neuroscience Methods, 2015 April 30


Diverse synaptic plasticity mechanisms orchestrated to form and retrieve memories in spiking neural networks.

Friedemann Zenke, Everton J. Agnes, & Wulfram Gerstner (EPFL)

Published in Nature Communications, 2015 April 21


Modelling and analysis of electrical potentials recorded in microelectrode arrays (MEAs).

Torbjørn V. Ness (NMBU), H. Chaitanya Chintaluri, Jan Potworowski, Szymon Łęski, Helena Głąbska, Daniel K. Wójcik, & Gaute T. Einevoll (NMBU)

Published in Neuroinformatics, 2015 March 31


Trainable hardware for dynamical computing using error backpropagation through physical media.

Michiel Hermans, Michaël Burm, Thomas Van Vaerenbergh, Joni Dambre (UGENT) & Peter Bienstman.

Published in Nature Communications, 2015 March 24


Memristor models for machine learning.

Juan Pablo Carbajal, Joni Dambre (UGENT), Michiel Hermans, & Benjamin Schrauwen (UGENT)

Published in Neural Computation, 2015 March


What Can Neuromorphic Event-Driven Precise Timing Add to Spike-Based Pattern Recognition?

Himanshu Akolkar, Cedric Meyer, Xavier Clady, Olivier Marre (UPMC), Chiara Bartolozzi, Stefano Panzeri & Ryad Benosman

Published in Neural Computation, 2015 March


Probabilistic inference in discrete spaces can be implemented into networks of LIF neurons.

D. Probst, M. A. Petrovici, I. Bytschok, J. Bill, D. Pecevski (TUGRAZ) J. Schemmel & KH Meier (UHEI)

Published in Frontiers in Computational Neuroscience, 2015 February 12


Gain modulation of synaptic inputs by network state in auditory cortex in vivo.

Ramon Reig, Yann Zerlaut, Ramiro Vergara, Alain Destexhe (CNRS UNIC) & M. Sanchez-Vives

Published in The Journal of Neuroscience, 2015 February 11


Peer-reviewed conference proceedings

Population Density Techniques for Modeling Neural Populations.

Marc de Kamps, Y. M. Lai and E. Duffin (LEEDS)

ICMNS 2015 (accepted abstract), June


On-Line Unsupervised Terrain Classification for a Compliant Tensegrity Robot using a Mixture of ESNs.

Joni Dambre, Jeroen Burms and Ken Caluwaerts (UGENT)

Accepted for publication in the proceedings of ICRA, May 26-27

Peer-reviewed journal publications

 Untangling basal ganglia network dynamics and function – role of dopamine depletion and inhibition investigated in a spiking network model

Lindahl M and Hellgren Kotaleski J (KTH)

Published in eNeuro, 22 December 2016


Local recording of biological magnetic fields using Giant Magneto Resistance-based microprobes

Francesca Barbieri, Vincent Trauchessec, Laure Caruso, Josué Trejo-Rosillo, Bartosz Telenczuk (CNRS), Elodie Paul, Thierry Bal, Alain Destexhe (CNRS), Claude Fermon, Myriam Pannetier-Lecoeur & Gilles Ouanounou

Published in Scientific Reports, 2016 December 19


Functional complexity emerging from anatomical constraints in the brain: the significance of network modularity and rich-clubs

Gorka Zamora-López (UPF), Yuhan Chen, Gustavo Deco (UPF), Morten L. Kringelbach & Changsong Zhou

Published in Scientific Reports, 2016 December 5


Environmental factors linked to depression vulnerability are associated with altered cerebellar resting-state synchronization.

Córdova-Palomera A., Tornador C., Falcón C., Bargalló N., Brambilla P., Crespo-Facorro B., Deco G. (UPF), and Fañanás L

Published in Scientific Reports, 2016 November 28


How do parcellation size and short-range connectivity affect dynamics in large-scale brain network models?

Timothée Proix, Andreas Spiegler (AMU), Michael Schirner, Simon Rothmeier, Petra Ritter, Viktor K. Jirsa (AMU)

Published in NeuroImage, 2016 November 15


Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue

Geir Halnes, Tuomo Mäki-Marttunen, Daniel Keller, Klas H. Pettersen, Ole A. Andreassen, Gaute T. Einevoll (NMBU)

Published in PLoS Computational Biology, 2016 November 7


[Re] Cellular and Network Mechanisms of Slow Oscillatory Activity (<1 Hz) and Wave Propagations in a Cortical Network Model

Andrei Maksimov, Sacha J. van Albada (JUELICH), and Markus Diesmann (JUELICH)

Published in ReScience, 2016 October 17


Structure and Topology Dynamics of Hyper-Frequency Networks during Rest and Auditory Oddball Performance

Viktor Müller, Dionysios Perdikis, Timo von Oertzen, Rita Sleimen-Malkoun, Viktor Jirsa (AMU)  and Ulman Lindenberger

Published in Frontiers in Computational Neuroscience, 2016 October 17


Identifying Anatomical Origins of Coexisting Oscillations in the Cortical Microcircuit.

Bos H, Diesmann M (JUELICH), Helias M (JUELICH)

Published in PLoS Computational Biology, October 13 2016


Unique membrane properties and enhanced signal processing in human neocortical neurons

Eyal G (HUJI), Verhoog MB, Testa-Silva G, Deitcher Y, Lodder JC, Benavides-Piccione R,
Morales J, DeFelipe J, de Kock CP, Mansvelder HD, Segev I (HUJI)

Published in eLife, October 6 2016


Selective activation of resting state networks following focal stimulation in a connectome-based network model of the human brain

Andreas Spiegler (AMU), Enrique C.A. Hansen, Christophe Bernard, Anthony R. McIntosh and Viktor K. Jirsa (AMU)

Published in eNeuro, 2016 September 21


Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations

Ekaterina Brocke, Upinder S. Bhalla, Mikael Djurfeldt, Jeanette Hellgren Kotaleski (KTH) and Michael Hanke

Published in Frontiers in Computational Neuroscience, 2016 September 12


Correlated Fluctuations in Strongly Coupled Binary Networks Beyond Equilibrium.

David Dahmen, Hannah Bos, and Moritz Helias (JUELICH)

Published in Physical Review E, August 19, 2016


Supervised Learning in Spiking Neural Networks for Precise Temporal Encoding

Brian Gardner (SURREY), André Grüning (SURREY)

Published in PLoS One, 2016 August 17


A Tractable Method for Describing Complex Couplings between Neurons and Population Rate

C. Gardella, O. Marre, T. Mora

Published in eNeuro, 2016 August 17

High-frequency oscillations in human and monkey neocortex during the wake-sleep cycle

Michel Le Van Quyen, Lyle Muller, Bartosz Telenczuk (CNRS), Eric Halgren, Sydney S. Cash, Nicholas G. Hatsopoulos, Nima Dehghani, and Alain Destexhe (CNRS)

Published in PNAS, 2016 August 16


Synchronous Spike Patterns in Macaque Motor Cortex during an Instructed-Delay Reach-to-Grasp Task

Emiliano Torre, Pietro Quaglio (JUELICH),  Michael Denker(JUELICH), Thomas Brochier, Alexa Riehle, and Sonja Grün (JUELICH)

Published in The Journal of Neuroscience, 2016 August 10


Resting state brain dynamics and its transients: a combined TMS-EEG study

Mireille Bonnard, Sophie Chen, Jérôme Gaychet, Marcel Carrere, Marmaduke Woodman, Bernard Giusiano & Viktor Jirsa (AMU)

Published in Scientific Reports, 2016 August 4


Learning maximum entropy models from finite-size data sets: A fast data-driven algorithm allows sampling from the posterior distribution

Ulisse Ferrari (UPMC)

Published in Physical Review E, 2016 August 1


Handling Metadata in a Neurophysiology Laboratory.

Zehl L, Jaillet F, Stoewer A, Sobolev A, Wachtler T, Brochier T, Riehle A, Denker M (JUELICH), Grün S. (JUELICH)

Pubished in Frontiers in Neuroinformatics, 19 July 2016


ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains

Emiliano Torre, Carlos Canova (JUELICH), Michael Denker (JUELICH), George Gerstein, Moritz Helias (JUELICH), Sonja Grün (JUELICH)

Published in PLoS Computational Biology, 2016 July 15


Hybrid scheme for modeling local field potentials from point-neuron networks

Espen Hagen, David Dahmen, Maria L. Stavrinou, Henrik Lindén, Tom Tetzlaff, Sacha J. van Albada (JUELICH), Sonja Grün (JUELICH), Markus Diesmann (JUELICH), Gaute T. Einevoll (NMBU)

Published in Cerebral CORTEX, 2016 July 12


Heterogeneity of time delays determines synchronization of coupled oscillators

Spase Petkoski (AMU), Andreas Spiegler (AMU), Timothée Proix, Parham Aram, Jean-Jacques Temprado , and Viktor K. Jirsa (AMU)

Published in Physical Review E, 2016 July 11


Heterogeneous firing rate response of mice layer V pyramidal neurons in the fluctuation-driven regime.

Y. Zerlaut, B.Telenczuk (CNRS), C.Deleuze, T.Bal, G.Ouanounou and A. Destexhe (CNRS)

Published in The Journal of Physiology, 2016 July 1


Reaction-diffusion-like formalism for plastic neural networks reveals dissipative solitons at criticality.

Dmytro Grytskyy, Markus Diesmann (JUELICH), and Moritz Helias (JUELICH)

Published in Physical Review E, June 6, 2016


Active subthreshold dendritic conductances shape the local field potential

Torbjørn V. Ness (NMBU), Michiel W. H. Remme and Gaute T. Einevoll (NMBU)

Published in The journal of Physiology, 2016 April 15


Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol

Heidi Teppola, Jertta-Riina Sarkanen, Tuula O. Jalonen and Marja-Leena Linne (TUT)

Published in Neurochemichal Research, 2016 April


Functional Mechanisms of Recovery after Chronic Stroke: Modeling with the Virtual Brain

Maria Inez Falcon, Jeffrey D. Riley,  Viktor Jirsa (AMU),  Anthony R. McIntosh,  E. Elinor Chen,  and Ana Solodkin

Published in eNeuro, 2016 March 23


Dynamic Balance of Excitation and Inhibition in Human and Monkey Neocortex

Nima Dehghani, Adrien Peyrache, Bartosz Telenczuk (CNRS), Michel Le Van Quyen, Eric Halgren, Sydney S. Cash, Nicholas G. Hatsopoulos & Alain Destexhe (CNRS)

Published in Scientific Reports, 2016 March 16


Estimation of Directed Effective Connectivity from fMRI Functional Connectivity Hints at Asymmetries of Cortical Connectome.

Matthieu Gilson, Ruben Moreno-Bote, Adrián Ponce-Alvarez, Petra Ritter, Gustavo Deco (UPF)

Published in PLoS Computational Biology, 2016 March 16


Somato-dendritic Synaptic Plasticity and Error-backpropagation in Active Dendrites.

Schiess M, Urbanczik R and Senn W (UBERN)

Published in PLoS Computational Biology, 2016 February 3


Intracellular Impedance Measurements Reveal Non-ohmic Properties of the Extracellular Medium around Neurons.

Jean-Marie Gomes, Claude Bédard, Silvana Valtcheva, Matthew Nelson, Vitalia Khokhlova, Pierre Pouget, Laurent Venance, Thierry Bal and Alain Destexhe (CNRS)

Published in Biophysical Journal, 2016 January 5

Peer-reviewed journal publications

Multiplexed computations in retinal ganglion cells of a single type

Deny S, Ferrari U (UPMC), Mace E, Yger P, Caplette R, Picaud S, Tkacik G, Marre O (UPMC)

Published in Nature Communications,  2017 December 8


Task-related effective connectivity reveals that the cortical rich club gates cortex-wide communication

Mario Senden, Niels Reuter, Martijn P. van den Heuvel, Rainer Goebel, Gustavo Deco (UPF), Matthieu Gilson

Published in Human Brain Mapping, 2017 December 8


Dynamical response properties of neocortical neurons to conductance-driven time-varying inputs

Linaro, D., Biró, I. and Giugliano, M. (UA)

Published in European Journal of Neuroscience, 2017 December 2


Predicting Non-Linear Dynamics: A Stable Local Learning Scheme for Recurrent Spiking Neural Networks

Gilra, Aditya, and Wulfram Gerstner (EPFL)

Published in eLife, 2017 November 27


Pleiotropic effects of schizophrenia-associated genetic variants in neuron firing and cardiac pacemaking revealed by computational modeling

Tuomo Mäki-Marttunen, Glenn T. Lines, Andrew G. Edwards, Aslak Tveito, Anders M. Dale, Gaute T. Einevoll (NMBU) & Ole A. Andreassen

Published in Nature translational Pyschiatry, 2017 November 17


Comprehensive Morpho-Electrotonic Analysis Shows 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex.

Yair Deitcher (HUJI), Guy Eyal (HUJI), Lida Kanari, Matthijs B. Verhoog, Guy Antoine Atenekeng Kahou, Huibert D. Mansvelder, Christiaan P.J. de Kock, and Idan Segev (HUJI)

Published in Cerebral Cortex, 2017 November


Is the Extracellular Impedance High and Nonresistive in Cerebral Cortex?

Claude Bédard and Alain Destexhe (CNRS and EITN)

Published in Biophysical Journal (comment to the Editor), 2017 October 3


Bistability, non-ergodicity, and inhibition in pairwise maximum-entropy models

Vahid Rostami, PierGianLuca Porta Mana, Sonja Grün (JUELICH), Moritz Helias (JUELICH)

Published in PloS Computational Biology, 2017 October 2


Resting state networks in empirical and simulated dynamic functional connectivity

Katharina Glomb, Adrián Ponce-Alvarez, Matthieu Gilson, Petra Ritter, Gustavo Deco

Published in NeuroImage, 2017 October 1


Memory States and Transitions between Them in Attractor Neural Networks

Stefano Recanatesi (WEIZMANN), Mikhail Katkov (WEIZMANN) and Misha Tsodyks (WEIZMANN)

Published in Neural Computation, 2017 October


Uncovering the underlying mechanisms and whole-brain dynamics of deep brain stimulation for Parkinson’s disease

Victor M. Saenger, Joshua Kahan, Tom Foltynie, Karl Friston, Tipu Z. Aziz, Alexander L. Green, Tim J. van Hartevelt , Joana Cabral, Angus B. A. Stevner, Henrique M. Fernandes, Laura Mancini, John Thornton, Tarek Yousry, Patricia Limousin, Ludvic Zrinzo, Marwan Hariz, Paulo Marques, Nuno Sousa, Morten L. Kringelbach & Gustavo Deco (UPF)

Published in Scientific reports, 2017 August 29


Cell-type–specific inhibition of the dendritic plateau potential in striatal spiny projection neurons

Kai Du, Yu-Wei Wu, Robert Lindroos, Yu Liu, Balázs Rózsa, Gergely Katona, Jun B. Ding, and Jeanette Hellgren Kotaleski (KTH)

Published in PNAS, 2017 August 21


Cognitive performance in healthy older adults relates to spontaneous switching between states of functional connectivity during rest

Joana Cabral, Diego Vidaurre, Paulo Marques, Ricardo Magalhães, Pedro Silva Moreira, José Miguel Soares, Gustavo Deco (UPF), Nuno Sousa & Morten L. Kringelbach

Published in Scientific reports, 2017 July 11


Refractoriness Accounts for Variable Spike Burst Responses in Somatosensory Cortex

Bartosz Teleńczuk (CNRS UNIC EITN), Richard Kempter, Gabriel Curio and Alain Destexhe (CNRS & EITN)

Published in eNeuro, 2017 August 14


Population density equations for stochastic processes with memory kernels

Yi Ming Lai (ULEEDS) and Marc de Kamps (ULEEDS)

Published in Physical Review E., 2017 June 20


Theta-paced flickering between place-cell maps in the hippocampus: A model based on short-term synaptic plasticity

Shirley Mark, Sandro Romani, Karel Jezek, Misha Tsodyks (WEIZMANN)

Published in Hippocampus, 2017 June 14


The Virtual Mouse Brain: A Computational Neuroinformatics Platform to Study Whole Mouse Brain Dynamics

Francesca Melozzi (AMU), Marmaduke M. Woodman, Viktor K. Jirsa (AMU) and Christophe Bernard

Published in eNeuro, 2017 June 12


The dynamics of resting fluctuations in the brain: metastability and its dynamical cortical core

Gustavo Deco (UPF), Morten L. Kringelbach, Viktor K. Jirsa (AMU) & Petra Ritter

Published in Scientific Reports, 2017 June 8


Enhanced Responsiveness and Low-Level Awareness in Stochastic Network States

Yann Zerlaut, Alain Destexhe (CNRS UNIC EITN)

Published in Neuron, 2017 June 7


Hierarchy of Information Processing in the Brain: A Novel ‘Intrinsic Ignition’ Framework

Gustavo Deco (UPF), Morten L. Kringelbach

Published in Neuron, 2017 June 7


Symmetry Breaking in Space-Time Hierarchies Shapes Brain Dynamics and Behavior

 Ajay S. Pillai, Viktor K. Jirsa (AMU)

Published in Neuron, 2017 June 7


Memory Retrieval from First Principles

M. Katkov (WEIZMANN), S. Romani, M. Tsodyks (WEIZMANN)

Published in Neuron, 2017 June 7


Improving voltage-sensitive dye imaging: with a little help from computational approaches

Sandrine Chemla, Lyle Muller, Alexandre Reynaud, Sylvain Takerkart, Alain Destexhe (CNRS & EITN), Frédéric Chavane

Published in Neurophotonics, 2017 May 19


Random versus maximum entropy models of neural population activity

Ulisse Ferrari (UPMC), Tomoyuki Obuchi, and Thierry Mora

Published in Physical Review E, 2017 April 27


Switch from ambient to focal processing mode explains the dynamics of free viewing eye movements.

Junji Ito (JUELICH), Yukako Yamane, Mika Suzuki, Pedro Maldonado, Ichiro Fujita, Hiroshi Tamura & Sonja Grün (JUELICH)

Published in Scientific Reports, 2017 April 24


Towards a theory of cortical columns: From spiking neurons to interacting neural populations of finite size

Tilo Schwalger, Moritz Deger & Wulfram Gerstner (EPFL)

Published in PLoS Computational Biology, 2017 April 19


How structure sculpts function: Unveiling the contribution of anatomical connectivity to the brain’s spontaneous correlation structure

R. G. Bettinardi, G. Deco (UPF), V. M. Karlaftis, T. J. Van Hartevelt, H. M. Fernandes, Z. Kourtzi, M. L. Kringelbach, and G. Zamora-López (UPF)

Published in Chaos, 2017 April 17


Heterogeneous firing responses predict diverse couplings to presynaptic activity in mice layer V pyramidal neurons

Yann Zerlaut & Alain Destexhe (CNRS & EITN)

Published in PLoS Computational Biology, 2017 April 14


Interplay between periodic stimulation and GABAergic inhibition in striatal network oscillations

Jovana J. Belić (KTH), Arvind Kumar, Jeanette Hellgren Kotaleski (KTH)

Published in PloS One, 2017 April 6


The temporal paradox of Hebbian learning and homeostatic plasticity

Friedemann Zenke, Wulfram Gerstner (EPFL) and Surya Ganguli

Published in Current Opinions in Neurobiology, 2017 April


Ion diffusion may introduce spurious current sources in current-source density

Geir Halnes, Tuomo Mäki-Marttunen, Klas H. Pettersen, Ole A. Andreassen, and Gaute T. Einevoll (NMBU)

Published in Journal of Neurophysiology, 2017 March 15


Hebbian plasticity requires compensatory processes on multiple timescales

Friedemann Zenke and Wulfram Gerstner (EPFL)

Published in Philosophical Transactions B, 2017 March 5


Recent progress in multi-electrode spike sorting methods

Baptiste Lefebvre, Pierre Yger & Olivier Marre (UPMC)

Published in Journal of Physiology - Paris, 2017 March 2


Hopf bifurcation in a nonlocal nonlinear transport equation stemming from stochastic neural dynamics

Audric Drogoul & Romain Veltz (INRIA)

Published in Chaos, 2017 February 22


Reproducibility and comparability of computational models for astrocyte calcium excitability

Tiina Manninen (TUT), Riikka Havela (TUT) & Marja-Leena Linne (TUT)

Published in Frontiers in Neuroinformatics, 2017 February 21


A framework to reconcile frequency scaling measurements, from intracellular recordings, local-field potentials, up to EEG and MEG signals

Claude Bedard, Jean-Marie Gomes, Thierry Bal & Alain Destexhe (CNRS & EITN)

Published in Journal of integrative Neuroscience


Individual brain structure and modelling predict seizure propagation.

Proix T., Bartolomei F., Guye M., Jirsa V. (AMU).

Published in Brain, 2017 February 4


Fundamental activity constraints lead to specific interpretations of the connectome

Schuecker J, Schmidt M, van Albada SJ (JUELICH), Diesmann M (JUELICH), Helias M. (JUELICH)

Published in PLoS Computational Biology, 2017 February 1


Power-law statistics and universal scaling in the absence of criticality

Touboul, J. and Destexhe, A. (CNRS & EITN)

Published in Physical Review E, 2017 January 31


Synaptic correlates of working memory capacity.

Y. Mi, M. Katkov & M. Tsodyks (WEIZMANN).

Published in Neuron, 2017 january 18


Impedance spectrum in cortical tissue: Implications for propagation of LFP signals on the microscopic level

Stéphanie Miceli, Torbjørn V. Ness (NMBU), Gaute T Einevoll (NMBU) & Dirk Schubert

Published in eNeuro, 2017 January 16


The Virtual Epileptic Patient: Individualized whole-brain models of epilepsy spread

V.K. Jirsa (AMU), T. Proix, D. Perdikis, M.M. Woodman, H. Wang, J. Gonzalez-Martinez, C. Bernard, C. Bénar, M. Guye, P. Chauvel, F. Bartolomei

Published in NeuroImage, 2017 January 15


Multiple Choice Neurodynamical Model of the Uncertain Option Task

Andrea Insabato, Mario Pannunzi, Gustavo Deco (UPF)

Published in PLoS Computational Biology, 2017 January 11


Local field potentials primarily reflect inhibitory neuron activity in human and monkey cortex

Bartosz Telenczuk (CNRS UNIC EITN), Nima Dehghani, Michel Le Van Quyen, Sydney S Cash, Eric Halgren, Nicholas G Hatsopoulos & Alain Destexhe (CNRS UNIC EITN)

Published in Scientific Reports, 2017 January 11


Conference proceedings

Pairwise Ising Model Analysis of Human Cortical Neuron Recordings

Trang-Anh Nghiem, Olivier Marre, Alain Destexhe, Ulisse Ferrari

GSI 2017: Geometric Science of Information


Peer-reviewed journal publications

Reproducible neural network simulations: statistical methods for model validation on the level of network activity data

Gutzen R., Von Papen M., Trensch G., Quaglio, Grün S., Denker M.

Published in Frontiers in Neuroinformatics, 2018 December 19


Large and fast human pyramidal neurons associate with intelligence

Natalia A Goriounova is a corresponding autor, Djai B Heyer, René Wilbers, Matthijs B Verhoog, Michele Giugliano, Christophe Verbist, Joshua Obermayer, Amber Kerkhofs, Harriët Smeding, Maaike Verberne, Sander Idema, Johannes C Baayen, Anton W Pieneman, Christiaan PJ de Kock, Martin Klein, Huibert D Mansvelder 

Published in eLife, 2018 December 18


Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0

Espen Hagen, Solveig Naess, Torbjorn V. Ness, Gaute T. Einevoll

Published in Frontiers in Neuroinformatics, 2018 December 18


Dendritic sodium spikes endow neurons with inverse firing rate response to correlated synaptic activity

Tomasz Gorski, Romain Veltz, Mathieu Galtier, Helissande Fragnaud, Jennifer S. Goldman, Bartosz Telenczuk, Alain Destexhe

Published in Journal of Computational Neuroscience, 2018 December 13


Neural timing of stimulus events with microsecond precision

Jinhong Luo, Silvio Macias, Torbjorn V. Ness, Gaute T. Einevoll, Kechen Zhang, Cynthia F. Moss

Published in Plos Computational Biology, 2018 October 26


A simple model for low variability in neural spike trains

Ulisse Ferrari, Stéphane Deny, Olivier Marre, Thierry Mora

Published in Neural Computation, 2018 November 1


A multi-scale layer-resolved spiking network model of resting-state dynamics in macaque visual cortical areas

Schmidt M, Bakker R, Shen K, Bezgin G, Diesmann M, van Albada SJ

Published in Plos Computational Biology, 2018 October 18


Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons

Ulisse Ferrari, Stéphane Deny, Matthew Chalk, Gašper Tkačik,Olivier Marre, Thierry Mora

Published in Physical Review, 2018 October 17


Searching for visual features that explain response variance of face neurons in inferior temporal cortex

Takashi Owaki, Michel Vidal-Naquet, Yunjun Nam, Go Uchida, Takayuki Sato, Hideyuki Câteau, Shimon Ullman, Manabu Tanifuji

Published in Plos One, 2018, September 20


Model-Based Spatial Navigation in the Hippocampus-Ventral Striatum Circuit: A Computational Analysis

Ivilin Stoianov, Cyriel Pennartz, Carien Lansink and Giovanni Pezzulo

Published in Plos Computational Biology, 2018 September 19


Combining biophysical modeling and deep learning for multielectrode array neuron localization and classification

Alessio P. Buccino, Michael Kordovan, Torbjørn V. Ness, Benjamin Merkt, Philipp D. Häfliger, Marianne Fyhn, Gert Cauwenberghs, Stefan Rotter, and Gaute T. Einevoll

Published in Journal of Physiology, 2018 September 05


A neural-level model of spatial memory and imagery

Andrej Bicanski, Neil Burgess

Published in eLife, 2018 September 4


Expansion of the effective action around non-Gaussian theories

Tobias Kühn and Moritz Helias

Published in Journal of Physics A: Mathematical and Theoretical, 2018 August 10


Eligibility Traces and Plasticity on Behavioral Time Scales: Experimental Support of NeoHebbian Three-Factor Learning Rules

Wulfram Gerstner, Marco Lehmann, Vasiliki Liakoni, Dane Corneil and Johanni Brea

Published in Frontiers in Neural Circuits, 2018 July 31


Criteria on balance, stability, and excitability in cortical networks for constraining computational models

A. Maksimov, M. Diesmann (JUELICH), S.J. van Albada (JUELICH)

Published in Frontiers in Computational Neuroscience, 2018 July 10


Phase-lags in large scale brain synchronization: Methodological considerations and in-silico analysis

Spase Petkoski, J. Matias Palva, Viktor K. Jirsa

Published in Plos Computational Biology, 2018 July 10


Excitable neuronal assemblies with adaptation as a building block of brain circuits for velocity-controlled signal propagation

Hesam Setareh, Moritz Deger, Wulfram Gerstner (EPFL)

Published in Plos Computational Biology, 2018 July 6


Maximum-entropy models reveal the excitatory and inhibitory correlation structures in cortical neuronal activity

Trang-Anh Nghiem, Bartosz Telenczuk, Olivier Marre, Alain Destexhe, and Ulisse Ferrari

Published in Physical Review E, 2018 July 5


Human Cortical Pyramidal Neurons: From Spines to Spikes via Models

Guy Eyal (HUJI), Matthijs B. Verhoog, Guilherme Testa-Silva, Yair Deitcher, Ruth Benavides-Piccione, Javier DeFelipe, Christiaan P. J. de Kock, Huibert D. Mansvelder and Idan Segev (HUJI)

Published in Frontiers in Cellular Neuroscience, 2018 June 29


h-Type Membrane Current Shapes the Local Field Potential from Populations of Pyramidal Neurons

Torbjørn V. Ness, Michiel W.H. Remme and Gaute T. Einevoll

Published in Journal of Neuroscience, 2018 June 27


Investigating large-scale brain dynamics using field potential recordings: analysis and interpretation

Bijan Pesaran, Martin Vinck, Gaute T. Einevoll, Anton Sirota, Pascal Fries, Markus Siegel, Wilson Truccolo, Charles E. Schroeder & Ramesh Srinivasan

Published in Nature Neuroscience, 2018 June 25


Spatial cell firing during virtual navigation of open arenas by head-restrained mice

Chen G, King JA, Lu Y, Cacucci F, Burgess N (UCL)

Published in eLife, 2018 June 18


Image interpretation above and below the object level

Guy Ben-Yosef, Shimon Ullman

Published in Royal Society Interface Focus, 2018 June 15


Single-layer graphene modulates neuronal communication and augments membrane ion currents

N. P. Pampaloni, M. Lottner, M. Giugliano (UA), A. Matruglio, F. D’Amico, M. Prato, J. A. Garrido, L. Ballerini & D. Scaini

Published in Nature Nanotechnology, 2018 June 11


Performance Comparison of the Digital Neuromorphic Hardware SpiNNaker and the Neural Network Simulation Software NEST for a Full-Scale Cortical Microcircuit Model

S. J. van Albada (Jülich), A. G. Rowley, J. Senk, M. Hopkins, M. Schmidt, A. B. Stokes, D.R. Lester, M. Diesmann (Jülich), S. B. Furber

Published in Frontiers in Neuroscience, 2018 May 23


Contribution of the Axon Initial Segment to Action Potentials Recorded Extracellularly

Maria Teleńczuk (CNRS), Romain Brette, Alain Destexhe (CNRS) and Bartosz Teleńczuk (CNRS)

Published in eNeuro, 2018 May 21


Framework based on communicability and flow to analyze complex network dynamics

Matthieu Gilson (UPF), Nikos E. Kouvaris, Gustavo Deco (UPF), Gorka Zamora-López (UPF)

Published in Phys.Rev. E, 2018 May 02


On a Recursive Construction of Circular Paths and the Search for π on the Integer Lattice ℤ2

Michelle Rudolph-Lilith (CNRS)

Published in Discrete & Computational Geometry, 2018 April


Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures

Tiina Manninen, Jugoslava Aćimović, Riikka Havela, Heidi Teppola, Marja-Leena Linne

Published in Frontiers in Neuroinformatics, 2018 April 24


A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo

Pierre Yger, Giulia LB Spampinato, Elric Esposito, Baptiste Lefebvre, Stéphane Deny, Christophe Gardella, Marcel Stimberg, Florian Jetter, Guenther Zeck, Serge Picaud, Jens Duebel, Olivier Marre (UPMC)

Published in eLife, 2018 April 19


Computational Models for Calcium-Mediated Astrocyte Functions

Tiina Manninen (TUT), Riikka Havela (TUT), Marja-Leena Linne (TUT)

Published in Frontiers in Computational Neuroscience, 2018 April 4


Multicontact Co-operativity in Spike-Timing–Dependent Structural Plasticity Stabilizes Networks

Moritz Deger, Alexander Seeholzer, Wulfram Gerstner (EPFL)

Published in Cerebral Cortex, 2018 April 1


An integrate-and-fire model to generate spike trains with long-range dependence

Alexandre Richard, Patricio Orio, Etienne Tanré (Inria)

Published in Journal of Computational Neuroscience, 2018 March 24


Predicting the spatiotemporal diversity of seizure propagation and termination in human focal epilepsy

Timothée Proix, Viktor K. Jirsa (AMU), Fabrice Bartolomei, Maxime Guye, Wilson Truccolo

Published in Nature Communications, 2018 March 14


Blindfold learning of an accurate neural metric

C. Gardella, O. Marre (UPMC), T. Mora

Published in PNAS, 2018 March 12


Biophysical network modeling of the dLGN circuit: Effects of cortical feedback on spatial response properties of relay cells

Pablo Martínez-Cañada, Milad Hobbi Mobarhan, Geir Halnes, Marianne Fyhn, Christian Morillas, Francisco Pelayo, Gaute T. Einevoll (NMBU)

Published in PLOS Computational Biology, 2018 February 28


Extremely Scalable Spiking Neuronal Network Simulation Code: From Laptops to Exascale Computers

Jakob Jordan, Tammo Ippen, Moritz Helias (JUELICH), Itaru Kitayama, Mitsuhisa Sato, Jun Igarashi, Markus Diesmann (JUELICH), Susanne Kunkel

Published in Frontiers in  Neuroinformatics, 2018 February 16


Kramers-Kronig relations and the properties of conductivity and permittivity in heterogeneous media.

Claude Bedard and Alain Destexhe (CNRS & EITN)

Published in Journal of Electromagnetic Analysis and Applications, 2018 February


Modeling mesoscopic cortical dynamics using a mean-field model of conductance-based networks of adaptive exponential integrate-and-fire neurons

Yann Zerlaut, Sandrine Chemla, Frederic Chavane, Alain Destexhe (CNRS UNIC EITN)

Published in Journal of Computational Neuroscience, 2018 February


Closed-Loop Estimation of Retinal Network Sensitivity by Local Empirical Linearization

Ulisse Ferrari (UMPC), Christophe Gardella, Olivier Marre (UPMC), Thierry Mora

Published in eNeuro, 2018 January 16


Toward a unified theory of efficient, predictive, and sparse coding

Matthew Chalk, Olivier Marre (UPMC), Gašper Tkačik

Published in PNAS, 2018 January 2


Peer-reviewed conference proceedings

Discovering unexpected local nonlinear interactions in scientific black-box models

Michael Doron, Idan Segev, Dafna Shahaf

Published in Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery and Data mining (KDD2019), 2019 August 04 - 08

Peer-reviewed journal publications

Correlation transfer by layer 5 cortical neurons under recreated synaptic inputs in vitro

Linaro D., Ocker GK, Doiron B., Giugliano M.

Published in The Journal of Neuroscience, 2019 September 25


Unique features of network bursts emerge from the complex interplay of excitatory and inhibitory receptors in rat neocortical networks

Heidi Teppola, Jugoslava Acimovic and Marja-Leena Linne

Published in Frontiers in Cellular Neuroscience, 2019 September 6


Awakening: Predicting external stimulation to force transitions between different brain states

Gustavo Deco, Josephine Cruzat, Joana Cabral, Enzo Tagliazucchi, Helmut Laufs, Nikos K. Logothetis, and Morten L. Kringelbach

Published in PNAS, 2019 September 3


The hidden repertoire of brain dynamics and dysfunction

Anthony R. McIntosh and Viktor K. Jirsa

Published in Network Neuroscience, 2019 August 15


Navigating with grid and place cells in cluttered environments

Vegard Edvardsen, Andrej Bicanski, Neil Burgess

Published in Hippocampus, 2019 August 13


Differential neural dynamics underling pragmatic and semantic affordance processing in macaque ventral premotor cortex

Monica Maranesi, Stefania Bruni, Alessandro Livi, Francesco Donnarumma, Giovanni Pezzulo and Luca Bonini

Published in Scientific reports, 2019 August 12


Biophysical psychiatry - How computational neuroscience can help to understand the complex mechanisms of mental disorders

Tuomo Mäki-Marttunen, Tobias Kaufmann, Torbjørn Elvsåshagen, Anna Devor, Srdjan Djurovic, Lars T. Westlye, Marja-Leena Linne, Marcella Rietschel, Dirk Schubert, Stefan Borgwardt, Magdalena Efrim-Budisteanu, Francesco Bettella, Geir Halnes, Espen Hagen, Solveig Næss, Torbjørn V. Ness, Torgeir Moberget, Christoph Metzner, Andrew G. Edwards, Marianne Fyhn, Anders M. Dale, Gaute T. Einevoll and Ole A. Andreassen

Published in Frontiers in Psychiatry, 2019 August 6


Detection and evaluation of bursts in terms of novelty and surprise

Junji Ito, Emanuele Lucrezia, Günther Palm, Sonja Grün

Published in Mathematical Biosciences and Engineering, 2019 July 31


Transmission time delays organize the brain network synchronization

Spase Petkoski and Viktor K. Jirsa

Published in Philosophical Transactions of the Royal Society, 2019 July 22


Long-time behavior of a mean-field model of interacting neurons

Quentin Cormier, Etienne Tanré, Romain Veltz

Published in Stochastic Processes and their Applications, 2019 July 22


Emergence of hierarchical organization in memory for random material

Michelangelo Naim, Mikhail Katkov, Stefano Recanatesi, Misha Tsodyks

Published in Scientific reports, 2019 July 18


Network analysis of whole-brain fMRI dynamics: A new framework based on dynamic communicability

Matthieu Gilson, Nikos E. Kouvaris, Gustavo Deco, Jean-Francois Mangin, Cyril Poupon, Sandrine Lefranc, Denis Rivière, Gorka Zamora-Lopez

Published in NeuroImage, 2019 July 12


Grand Unified Theories of the Brain Need Better Understanding of Behavior: The Two-Tiered Emergence of Function

Viktor K. Jirsa, Anthony R. McIntosh & Raoul Huys

Published in Ecological Psychology, 2019 July 11


Evaluation of spike sorting algorithms: Simulations and application to human Subthalamic Nucleus recordings

J. Sukiban, N. Voges, T. A. Dembek, R. Pauli, V. Visser-Vandewalle, M. Denker, I. Weber, L. Timmermann, S. Grün

Published in Neuroscience, 2019 July 9


Differential Structure of Hippocampal CA1 Pyramidal Neurons in the Human and Mouse

Ruth Benavides-Piccione, Mamen Regalado-Reyes, Isabel Fernaud-Espinosa, Asta Kastanauskaite, Silvia Tapia-González, Gonzalo León-Espinosa, Concepcion Rojo, Ricardo Insausti, Idan Segev, Javier DeFelipe

Published in Cerebral Cortex, 2019 July 2


The Human Brain Project - Synergy between neuroscience, computing, informatics, and brain-inspired technologies

Katrin Amunts, Alois C. Knoll, Thomas Lippert, Cyriel M. A. Pennartz, Philippe Ryvlin, Alain Destexhe, Viktor K. Jirsa, Egidio D’Angelo, Jan G. Bjaalie

Published in PLOS Biology, 2019 July 1


Task-dependent functional organizations of the visual ventral stream

Han-Gue Jo, Junji Ito, Barbara Schulte Holthausen, Conrad Baumann, Sonja Grün, Ute Habel, Thilo Kellermann

Published in Scientific Reports, 2019 June 27


Optimization of surgical intervention outside the epileptogenic zone in the Virtual Epileptic Patient (VEP)

Sora An, Fabrice Bartolomei,  Maxime Guye, Viktor Jirsa

Published in PLOS Computational Biology, 2019 June 26


Second type of criticality in the brain uncovers rich multiple-neuron dynamics

David Dahmen, Sonja Grün, Markus Diesmann, and Moritz Helias

Published in PNAS, 2019 June 25


Biologically plausible deep learning - But how far can we go with shallow networks?

Bernd Illing, Wulfram Gerstner, Johanni Brea

Published in Neural Networks, 2019 June 20


Tracking the time course of Bayesian inference with event-related potentials: a study using the central cue posner paradigm

Carlos M. Gómez, Antonio Arjona, Francesco Donnarumma, Domenico Maisto, Elena I. Rodríguez-Martínez and Giovanni Pezzulo

Published in Frontiers in Psychology, 2019 June 19


Electrophysiological monitoring of inhibition in mammalian species, from rodents to humans

A. Peyrache, A. Destexhe

Published in Neurobiology of Disease, 2019 June 11


An architectonic type principle integrates macroscopic cortico-cortical connections with intrinsic cortical circuits of the primate brain

Claus C. Hilgetag , Sarah F. Beul, Sacha J. van Albada and Alexandros Goulas

Published in Network Neuroscience , 2019 June 7


Caching Mechanisms for Habit Formation in Active Inference

D. Maisto, K. Friston, G. Pezzulo

Published in Neurocomputing, 2019 June 4


Suppressive Traveling Waves Shape Representations of Illusory Motion in Primary Visual Cortex of Awake Primate

Sandrine Chemla, Alexandre Reynaud, Matteo di Volo, Yann Zerlaut, Laurent Perrinet, Alain Destexhe and Frédéric Chavane

Published in Journal in Neuroscience, 2019 May 29


The scientific case for brain simulations

Gaute T.Einevoll, Alain Destexhe, Markus Diesmann, Sonja Grun, Viktor Jirsa, Marc de Kamps, Michele Migliore, Torbjorn V; Ness, Hans E. Plesser, Felix Schurmann

Published in Neuron, 2019 May 22


Stability of working memory in continuous attractor networks under the control of short-term plasticity

A. Seeholzer, M. Deger, and W. Gerstner

Published in PLOS Computational Biology, 2019 April 19


Single-Cell and Neuronal Network Alterations in an In Vitro Model of Fragile X Syndrome

Anastasiya Moskalyuk, Sebastiaan Van De Vijver, Peter Verstraelen, Winnok H De Vos, R. Frank Kooy, Michele Giugliano

Published in Cerebral Cortex, 2019 April 4


Making the Environment an Informative Place: A Conceptual Analysis of Epistemic Policies and Sensorimotor Coordination

Giovanni Pezzulo and Stefano Nolfi

Published in Entropy, 2019 March 30


Biologically Realistic Mean-Field Models of Conductance-Based Networks of Spiking Neurons with Adaptation

Matteo di Volo, Alberto Romagnoni, Cristiano Capone, Alain Destexhe

Published in MIT Press, 2019 March 15


Computational geometry for modeling neural populations: From visualization to simulation

Marc de Kamps, Mikkel Lepperod, Yi Ming Lai

Published in PLOS Computational Biology, 2019 March 4


A Computational Model of Visual Recognition Memory via Grid Cells

Andrej Bicanski, Neil Burgess

Published in Current Biology, 2019 March 3


How does the presence of neural probes affect extracellular potentials?

Alessio Paolo Buccino, Miroslav Kuchta, Karoline Horgmo Jæger, Torbjørn Vefferstad Ness, Pierre Berthet, Kent-Andre Mardal, Gert Cauwenberghs, Aslak Tveito

Published in Journal of Neural Engineering, 2019 February 26


Controlling seizure propagation in large-scale brain networks

Simona Olmi, Spase Petkoski, Maxime Guye, Fabrice Bartolomei, Viktor Jirsa

Published in PLOS Computational Biology, 2019 February 25