Peer-reviewed journal publications

A compound memristive synapse model for statistical learning through STDP in spiking neural networks.

Johannes Bill & Robert Legenstein (TUGRAZ)

Published in Frontiers in Neuroscience, 2014 December 16

 

Great Expectations: Using Whole-Brain Computational Connectomics for Understanding Neuropsychiatric Disorders.

G. Deco (UPF) and M.L. Kringelbach

Published in Neuron, 2014 December 3

 

Generalized cable formalism to calculate the magnetic field of single neurons and neuronal populations.

Claude Bedard & Alain Destexhe (CNRS)

Published in Physical Review E, 2014 October 28

 

Ensembles of Spiking Neurons with Noise Support Optimal Probabilistic Inference in a Dynamically Changing Environment.

Robert Legenstein (TUGRAZ) & Wolfgang Maass (TUGRAZ)

Published in PLoS Computational Biology, 2014 October 23

 

NEVESIM: Event-Driven Neural Simulation Framework with a Python Interface.

D. Pecevski, D. Kappel and Z. Jonke (TUGRAZ).

Published in Frontiers in Neuroinformatics, 2014 August 14

 

Spike-timing prediction in cortical neurons with active dendrites.

Richard Naud, Brice Bathellier & Wulfram Gerstner (EPFL)

Published in Frontiers in Computational Neuroscience, 2014 August 13

 

Mean-field formulation of Maxwell equations to model electrically inhomogeneous and isotropic media.

Claude Bedard & Alain Destexhe (CNRS)

Published in Journal of Electromagnetic Analysis and Applications, 2014 July 15

 

How Local Excitation–Inhibition Ratio Impacts the Whole Brain Dynamics.

Gustavo Deco  (UPF), Adrian Ponce-Alvarez, Patric Hagmann, Gian Luca Romani, Dante Mantini & Maurizio Corbetta

Published in The Journal of Neuroscience, 2014 June 4

 

Noise as a resource for computation and learning in networks of spiking neurons.

Wolfgang Maass (TUGRAZ)

Published in Special Issue of the Proceedings of the IEEE on "Engineering Intelligent Electronic Systems based on Computational Neuroscience", 2014 April 14

 

Neural mechanisms of self-location.

Caswell Barry & Neil Burgess (UCL)

Published in Current Biology, 2014 April 14

 

A hybrid oscillatory interference / continuous attractor network model of grid cell firing.

Daniel Bush & Neil Burgess (UCL)

Published in The Journal of Neuroscience, 2014 April 2

 

What do grid Cells Contribute to Place Cell Firing?

Daniel Bush, Caswell Barry & Neil Burgess (UCL)

Published in Trends in Neurosciences, 2014 March

 

Peer-reviewed journal publications

Neural Network Model of Memory Retrieval

Stefano Recanatesi , Mikhail Katkov (WIS), Sandro Romani  & Misha Tsodyks (WIS)

Published in Frontiers in Computational Neuroscience, 2015 December 17

 

Dendritic and Axonal Architecture of Individual Pyramidal Neurons across Layers of Adult Human Neocortex

Hemanth Mohan, Matthijs B. Verhoog, Keerthi K. Doreswamy, Guy Eyal (HUJI), Romy Aardse, Brendan N. Lodder, Natalia A. Goriounova, Boateng Asamoah, A.B. Clementine B. Brakspear, Colin Groot, Sophie van der Sluis, Guilherme Testa-Silva, Joshua Obermayer, Zimbo S.R.M. Boudewijns, Rajeevan T. Narayanan, Johannes C. Baayen, Idan Segev (HUJI), Huibert D. Mansvelder & Christiaan P.J. de Kock

Published in Cerebral CORTEX, 2015 August 28

 

Learning Spatiotemporally Encoded Pattern Transformations in Structured Spiking Neural Networks

Brian gardner (SURREY), Ioana Sporea & André Grüning (SURREY)

Published in Neural Computation, 2015 November 24

 

The Encoding of Decision Difficulty and Movement Time in the Primate Premotor Cortex

Marina Martinez-Garcia, Andrea Insabato, Mario Pannunzi, Jose L. Pardo-Vazquez, Carlos Acuña & Gustavo Deco (UPF)

Published in PLoS Computational Biology, 2015 November 10

 

The Cognitive Architecture of Spatial Navigation: Hippocampal and Striatal Contributions

Fabian Chersi (UCL) & Neil Burgess (UCL)

Published in Neuron, 2015 October 7

 

The Rediscovery of Slowness: Exploring the Timing of Cognition

Morten L. Kringelbach, Anthony R. McIntosh, Petra Ritter, Viktor K. Jirsa (AMU), and Gustavo Deco (UPF)

Published in Trends in Cognitive Sciences, 2015 October

 

Non-stationary filtered shot noise processes and applications to neuronal membranes.

Marco Brigham & Alain Destexhe (CNRS)

Published in Physical Review E, 2015 June 3

 

Efficient simulation of optical nonlinear cavity circuits.

Thomas Van Vaerenbergh, Martin Fiers, Joni Dambre (UGENT)  & Peter Bienstman

Published in Optical and Quantum Electronics, 2015 June

 

On the effects on cortical spontaneous activity of the symmetries of the network of pinwheels in visual area V1.

Romain Veltz (INRIA), Pascal Chossat & Olivier Faugeras (INRIA)

Published in Journal of Mathematical Neuroscience, 2015 May 30

 

ViSAPy: A Python tool for biophysics-based generation of virtual spiking activity for evaluation of spike-sorting algorithms.

Espen Hagen, Torbjørn V. Ness (NMBU), Amir Khosrowshahi, Christina Sørensen, Marianne Fyhn, Torkel Hafting, Felix Franke & Gaute T. Einevoll (NMBU)

Published in Journal of Neuroscience Methods, 2015 April 30

 

Diverse synaptic plasticity mechanisms orchestrated to form and retrieve memories in spiking neural networks.

Friedemann Zenke, Everton J. Agnes, & Wulfram Gerstner (EPFL)

Published in Nature Communications, 2015 April 21

 

Modelling and analysis of electrical potentials recorded in microelectrode arrays (MEAs).

Torbjørn V. Ness (NMBU), H. Chaitanya Chintaluri, Jan Potworowski, Szymon Łęski, Helena Głąbska, Daniel K. Wójcik, & Gaute T. Einevoll (NMBU)

Published in Neuroinformatics, 2015 March 31

 

Trainable hardware for dynamical computing using error backpropagation through physical media.

Michiel Hermans, Michaël Burm, Thomas Van Vaerenbergh, Joni Dambre (UGENT) & Peter Bienstman.

Published in Nature Communications, 2015 March 24

 

Memristor models for machine learning.

Juan Pablo Carbajal, Joni Dambre (UGENT), Michiel Hermans, & Benjamin Schrauwen (UGENT)

Published in Neural Computation, 2015 March

 

What Can Neuromorphic Event-Driven Precise Timing Add to Spike-Based Pattern Recognition?

Himanshu Akolkar, Cedric Meyer, Xavier Clady, Olivier Marre (UPMC), Chiara Bartolozzi, Stefano Panzeri & Ryad Benosman

Published in Neural Computation, 2015 March

 

Probabilistic inference in discrete spaces can be implemented into networks of LIF neurons.

D. Probst, M. A. Petrovici, I. Bytschok, J. Bill, D. Pecevski (TUGRAZ) J. Schemmel & KH Meier (UHEI)

Published in Frontiers in Computational Neuroscience, 2015 February 12

 

Gain modulation of synaptic inputs by network state in auditory cortex in vivo.

Ramon Reig, Yann Zerlaut, Ramiro Vergara, Alain Destexhe (CNRS UNIC) & M. Sanchez-Vives

Published in The Journal of Neuroscience, 2015 February 11

 

Peer-reviewed conference proceedings

Population Density Techniques for Modeling Neural Populations.

Marc de Kamps, Y. M. Lai and E. Duffin (LEEDS)

ICMNS 2015 (accepted abstract), June

 

On-Line Unsupervised Terrain Classification for a Compliant Tensegrity Robot using a Mixture of ESNs.

Joni Dambre, Jeroen Burms and Ken Caluwaerts (UGENT)

Accepted for publication in the proceedings of ICRA, May 26-27

Peer-reviewed journal publications

 Untangling basal ganglia network dynamics and function – role of dopamine depletion and inhibition investigated in a spiking network model

Lindahl M and Hellgren Kotaleski J (KTH)

Published in eNeuro, 22 December 2016

 

Local recording of biological magnetic fields using Giant Magneto Resistance-based microprobes

Francesca Barbieri, Vincent Trauchessec, Laure Caruso, Josué Trejo-Rosillo, Bartosz Telenczuk (CNRS), Elodie Paul, Thierry Bal, Alain Destexhe (CNRS), Claude Fermon, Myriam Pannetier-Lecoeur & Gilles Ouanounou

Published in Scientific Reports, 2016 December 19

 

Functional complexity emerging from anatomical constraints in the brain: the significance of network modularity and rich-clubs

Gorka Zamora-López (UPF), Yuhan Chen, Gustavo Deco (UPF), Morten L. Kringelbach & Changsong Zhou

Published in Scientific Reports, 2016 December 5

 

Environmental factors linked to depression vulnerability are associated with altered cerebellar resting-state synchronization.

Córdova-Palomera A., Tornador C., Falcón C., Bargalló N., Brambilla P., Crespo-Facorro B., Deco G. (UPF), and Fañanás L

Published in Scientific Reports, 2016 November 28

 

How do parcellation size and short-range connectivity affect dynamics in large-scale brain network models?

Timothée Proix, Andreas Spiegler (AMU), Michael Schirner, Simon Rothmeier, Petra Ritter, Viktor K. Jirsa (AMU)

Published in NeuroImage, 2016 November 15

 

Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue

Geir Halnes, Tuomo Mäki-Marttunen, Daniel Keller, Klas H. Pettersen, Ole A. Andreassen, Gaute T. Einevoll (NMBU)

Published in PLoS Computational Biology, 2016 November 7

 

[Re] Cellular and Network Mechanisms of Slow Oscillatory Activity (<1 Hz) and Wave Propagations in a Cortical Network Model

Andrei Maksimov, Sacha J. van Albada (JUELICH), and Markus Diesmann (JUELICH)

Published in ReScience, 2016 October 17

 

Structure and Topology Dynamics of Hyper-Frequency Networks during Rest and Auditory Oddball Performance

Viktor Müller, Dionysios Perdikis, Timo von Oertzen, Rita Sleimen-Malkoun, Viktor Jirsa (AMU)  and Ulman Lindenberger

Published in Frontiers in Computational Neuroscience, 2016 October 17

 

Identifying Anatomical Origins of Coexisting Oscillations in the Cortical Microcircuit.

Bos H, Diesmann M (JUELICH), Helias M (JUELICH)

Published in PLoS Computational Biology, October 13 2016

 

Unique membrane properties and enhanced signal processing in human neocortical neurons

Eyal G (HUJI), Verhoog MB, Testa-Silva G, Deitcher Y, Lodder JC, Benavides-Piccione R,
Morales J, DeFelipe J, de Kock CP, Mansvelder HD, Segev I (HUJI)

Published in eLife, October 6 2016

 

Selective activation of resting state networks following focal stimulation in a connectome-based network model of the human brain

Andreas Spiegler (AMU), Enrique C.A. Hansen, Christophe Bernard, Anthony R. McIntosh and Viktor K. Jirsa (AMU)

Published in eNeuro, 2016 September 21

 

Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations

Ekaterina Brocke, Upinder S. Bhalla, Mikael Djurfeldt, Jeanette Hellgren Kotaleski (KTH) and Michael Hanke

Published in Frontiers in Computational Neuroscience, 2016 September 12

 

Correlated Fluctuations in Strongly Coupled Binary Networks Beyond Equilibrium.

David Dahmen, Hannah Bos, and Moritz Helias (JUELICH)

Published in Physical Review E, August 19, 2016

 

Supervised Learning in Spiking Neural Networks for Precise Temporal Encoding

Brian Gardner (SURREY), André Grüning (SURREY)

Published in PLoS One, 2016 August 17

 

A Tractable Method for Describing Complex Couplings between Neurons and Population Rate

C. Gardella, O. Marre, T. Mora

Published in eNeuro, 2016 August 17

High-frequency oscillations in human and monkey neocortex during the wake-sleep cycle

Michel Le Van Quyen, Lyle Muller, Bartosz Telenczuk (CNRS), Eric Halgren, Sydney S. Cash, Nicholas G. Hatsopoulos, Nima Dehghani, and Alain Destexhe (CNRS)

Published in PNAS, 2016 August 16

 

Synchronous Spike Patterns in Macaque Motor Cortex during an Instructed-Delay Reach-to-Grasp Task

Emiliano Torre, Pietro Quaglio (JUELICH),  Michael Denker(JUELICH), Thomas Brochier, Alexa Riehle, and Sonja Grün (JUELICH)

Published in The Journal of Neuroscience, 2016 August 10

 

Resting state brain dynamics and its transients: a combined TMS-EEG study

Mireille Bonnard, Sophie Chen, Jérôme Gaychet, Marcel Carrere, Marmaduke Woodman, Bernard Giusiano & Viktor Jirsa (AMU)

Published in Scientific Reports, 2016 August 4

 

Learning maximum entropy models from finite-size data sets: A fast data-driven algorithm allows sampling from the posterior distribution

Ulisse Ferrari (UPMC)

Published in Physical Review E, 2016 August 1

 

Handling Metadata in a Neurophysiology Laboratory.

Zehl L, Jaillet F, Stoewer A, Sobolev A, Wachtler T, Brochier T, Riehle A, Denker M (JUELICH), Grün S. (JUELICH)

Pubished in Frontiers in Neuroinformatics, 19 July 2016

 

ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains

Emiliano Torre, Carlos Canova (JUELICH), Michael Denker (JUELICH), George Gerstein, Moritz Helias (JUELICH), Sonja Grün (JUELICH)

Published in PLoS Computational Biology, 2016 July 15

 

Hybrid scheme for modeling local field potentials from point-neuron networks

Espen Hagen, David Dahmen, Maria L. Stavrinou, Henrik Lindén, Tom Tetzlaff, Sacha J. van Albada (JUELICH), Sonja Grün (JUELICH), Markus Diesmann (JUELICH), Gaute T. Einevoll (NMBU)

Published in Cerebral CORTEX, 2016 July 12

 

Heterogeneity of time delays determines synchronization of coupled oscillators

Spase Petkoski (AMU), Andreas Spiegler (AMU), Timothée Proix, Parham Aram, Jean-Jacques Temprado , and Viktor K. Jirsa (AMU)

Published in Physical Review E, 2016 July 11

 

Heterogeneous firing rate response of mice layer V pyramidal neurons in the fluctuation-driven regime.

Y. Zerlaut, B.Telenczuk (CNRS), C.Deleuze, T.Bal, G.Ouanounou and A. Destexhe (CNRS)

Published in The Journal of Physiology, 2016 July 1

 

Reaction-diffusion-like formalism for plastic neural networks reveals dissipative solitons at criticality.

Dmytro Grytskyy, Markus Diesmann (JUELICH), and Moritz Helias (JUELICH)

Published in Physical Review E, June 6, 2016

 

Active subthreshold dendritic conductances shape the local field potential

Torbjørn V. Ness (NMBU), Michiel W. H. Remme and Gaute T. Einevoll (NMBU)

Published in The journal of Physiology, 2016 April 15

 

Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol

Heidi Teppola, Jertta-Riina Sarkanen, Tuula O. Jalonen and Marja-Leena Linne (TUT)

Published in Neurochemichal Research, 2016 April

 

Functional Mechanisms of Recovery after Chronic Stroke: Modeling with the Virtual Brain

Maria Inez Falcon, Jeffrey D. Riley,  Viktor Jirsa (AMU),  Anthony R. McIntosh,  E. Elinor Chen,  and Ana Solodkin

Published in eNeuro, 2016 March 23

 

Dynamic Balance of Excitation and Inhibition in Human and Monkey Neocortex

Nima Dehghani, Adrien Peyrache, Bartosz Telenczuk (CNRS), Michel Le Van Quyen, Eric Halgren, Sydney S. Cash, Nicholas G. Hatsopoulos & Alain Destexhe (CNRS)

Published in Scientific Reports, 2016 March 16

 

Estimation of Directed Effective Connectivity from fMRI Functional Connectivity Hints at Asymmetries of Cortical Connectome.

Matthieu Gilson, Ruben Moreno-Bote, Adrián Ponce-Alvarez, Petra Ritter, Gustavo Deco (UPF)

Published in PLoS Computational Biology, 2016 March 16

 

Somato-dendritic Synaptic Plasticity and Error-backpropagation in Active Dendrites.

Schiess M, Urbanczik R and Senn W (UBERN)

Published in PLoS Computational Biology, 2016 February 3

 

Intracellular Impedance Measurements Reveal Non-ohmic Properties of the Extracellular Medium around Neurons.

Jean-Marie Gomes, Claude Bédard, Silvana Valtcheva, Matthew Nelson, Vitalia Khokhlova, Pierre Pouget, Laurent Venance, Thierry Bal and Alain Destexhe (CNRS)

Published in Biophysical Journal, 2016 January 5

Peer-reviewed journal publications

Multiplexed computations in retinal ganglion cells of a single type

Deny S, Ferrari U (UPMC), Mace E, Yger P, Caplette R, Picaud S, Tkacik G, Marre O (UPMC)

Published in Nature Communications,  2017 December 8

 

Task-related effective connectivity reveals that the cortical rich club gates cortex-wide communication

Mario Senden, Niels Reuter, Martijn P. van den Heuvel, Rainer Goebel, Gustavo Deco (UPF), Matthieu Gilson

Published in Human Brain Mapping, 2017 December 8

 

Dynamical response properties of neocortical neurons to conductance-driven time-varying inputs

Linaro, D., Biró, I. and Giugliano, M. (UA)

Published in European Journal of Neuroscience, 2017 December 2

 

Predicting Non-Linear Dynamics: A Stable Local Learning Scheme for Recurrent Spiking Neural Networks

Gilra, Aditya, and Wulfram Gerstner (EPFL)

Published in eLife, 2017 November 27

 

Pleiotropic effects of schizophrenia-associated genetic variants in neuron firing and cardiac pacemaking revealed by computational modeling

Tuomo Mäki-Marttunen, Glenn T. Lines, Andrew G. Edwards, Aslak Tveito, Anders M. Dale, Gaute T. Einevoll (NMBU) & Ole A. Andreassen

Published in Nature translational Pyschiatry, 2017 November 17

 

Comprehensive Morpho-Electrotonic Analysis Shows 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex.

Yair Deitcher (HUJI), Guy Eyal (HUJI), Lida Kanari, Matthijs B. Verhoog, Guy Antoine Atenekeng Kahou, Huibert D. Mansvelder, Christiaan P.J. de Kock, and Idan Segev (HUJI)

Published in Cerebral Cortex, 2017 November

 

Is the Extracellular Impedance High and Nonresistive in Cerebral Cortex?

Claude Bédard and Alain Destexhe (CNRS and EITN)

Published in Biophysical Journal (comment to the Editor), 2017 October 3

 

Bistability, non-ergodicity, and inhibition in pairwise maximum-entropy models

Vahid Rostami, PierGianLuca Porta Mana, Sonja Grün (JUELICH), Moritz Helias (JUELICH)

Published in PloS Computational Biology, 2017 October 2

 

Resting state networks in empirical and simulated dynamic functional connectivity

Katharina Glomb, Adrián Ponce-Alvarez, Matthieu Gilson, Petra Ritter, Gustavo Deco

Published in NeuroImage, 2017 October 1

 

Memory States and Transitions between Them in Attractor Neural Networks

Stefano Recanatesi (WEIZMANN), Mikhail Katkov (WEIZMANN) and Misha Tsodyks (WEIZMANN)

Published in Neural Computation, 2017 October

 

Uncovering the underlying mechanisms and whole-brain dynamics of deep brain stimulation for Parkinson’s disease

Victor M. Saenger, Joshua Kahan, Tom Foltynie, Karl Friston, Tipu Z. Aziz, Alexander L. Green, Tim J. van Hartevelt , Joana Cabral, Angus B. A. Stevner, Henrique M. Fernandes, Laura Mancini, John Thornton, Tarek Yousry, Patricia Limousin, Ludvic Zrinzo, Marwan Hariz, Paulo Marques, Nuno Sousa, Morten L. Kringelbach & Gustavo Deco (UPF)

Published in Scientific reports, 2017 August 29

 

Cell-type–specific inhibition of the dendritic plateau potential in striatal spiny projection neurons

Kai Du, Yu-Wei Wu, Robert Lindroos, Yu Liu, Balázs Rózsa, Gergely Katona, Jun B. Ding, and Jeanette Hellgren Kotaleski (KTH)

Published in PNAS, 2017 August 21

 

Cognitive performance in healthy older adults relates to spontaneous switching between states of functional connectivity during rest

Joana Cabral, Diego Vidaurre, Paulo Marques, Ricardo Magalhães, Pedro Silva Moreira, José Miguel Soares, Gustavo Deco (UPF), Nuno Sousa & Morten L. Kringelbach

Published in Scientific reports, 2017 July 11

 

Refractoriness Accounts for Variable Spike Burst Responses in Somatosensory Cortex

Bartosz Teleńczuk (CNRS UNIC EITN), Richard Kempter, Gabriel Curio and Alain Destexhe (CNRS & EITN)

Published in eNeuro, 2017 August 14

 

Population density equations for stochastic processes with memory kernels

Yi Ming Lai (ULEEDS) and Marc de Kamps (ULEEDS)

Published in Physical Review E., 2017 June 20

 

Theta-paced flickering between place-cell maps in the hippocampus: A model based on short-term synaptic plasticity

Shirley Mark, Sandro Romani, Karel Jezek, Misha Tsodyks (WEIZMANN)

Published in Hippocampus, 2017 June 14

 

The Virtual Mouse Brain: A Computational Neuroinformatics Platform to Study Whole Mouse Brain Dynamics

Francesca Melozzi (AMU), Marmaduke M. Woodman, Viktor K. Jirsa (AMU) and Christophe Bernard

Published in eNeuro, 2017 June 12

 

The dynamics of resting fluctuations in the brain: metastability and its dynamical cortical core

Gustavo Deco (UPF), Morten L. Kringelbach, Viktor K. Jirsa (AMU) & Petra Ritter

Published in Scientific Reports, 2017 June 8

 

Enhanced Responsiveness and Low-Level Awareness in Stochastic Network States

Yann Zerlaut, Alain Destexhe (CNRS UNIC EITN)

Published in Neuron, 2017 June 7

 

Hierarchy of Information Processing in the Brain: A Novel ‘Intrinsic Ignition’ Framework

Gustavo Deco (UPF), Morten L. Kringelbach

Published in Neuron, 2017 June 7

 

Symmetry Breaking in Space-Time Hierarchies Shapes Brain Dynamics and Behavior

 Ajay S. Pillai, Viktor K. Jirsa (AMU)

Published in Neuron, 2017 June 7

 

Memory Retrieval from First Principles

M. Katkov (WEIZMANN), S. Romani, M. Tsodyks (WEIZMANN)

Published in Neuron, 2017 June 7

 

Improving voltage-sensitive dye imaging: with a little help from computational approaches

Sandrine Chemla, Lyle Muller, Alexandre Reynaud, Sylvain Takerkart, Alain Destexhe (CNRS & EITN), Frédéric Chavane

Published in Neurophotonics, 2017 May 19

 

Random versus maximum entropy models of neural population activity

Ulisse Ferrari (UPMC), Tomoyuki Obuchi, and Thierry Mora

Published in Physical Review E, 2017 April 27

 

Switch from ambient to focal processing mode explains the dynamics of free viewing eye movements.

Junji Ito (JUELICH), Yukako Yamane, Mika Suzuki, Pedro Maldonado, Ichiro Fujita, Hiroshi Tamura & Sonja Grün (JUELICH)

Published in Scientific Reports, 2017 April 24

 

Towards a theory of cortical columns: From spiking neurons to interacting neural populations of finite size

Tilo Schwalger, Moritz Deger & Wulfram Gerstner (EPFL)

Published in PLoS Computational Biology, 2017 April 19

 

How structure sculpts function: Unveiling the contribution of anatomical connectivity to the brain’s spontaneous correlation structure

R. G. Bettinardi, G. Deco (UPF), V. M. Karlaftis, T. J. Van Hartevelt, H. M. Fernandes, Z. Kourtzi, M. L. Kringelbach, and G. Zamora-López (UPF)

Published in Chaos, 2017 April 17

 

Heterogeneous firing responses predict diverse couplings to presynaptic activity in mice layer V pyramidal neurons

Yann Zerlaut & Alain Destexhe (CNRS & EITN)

Published in PLoS Computational Biology, 2017 April 14

 

Interplay between periodic stimulation and GABAergic inhibition in striatal network oscillations

Jovana J. Belić (KTH), Arvind Kumar, Jeanette Hellgren Kotaleski (KTH)

Published in PloS One, 2017 April 6

 

The temporal paradox of Hebbian learning and homeostatic plasticity

Friedemann Zenke, Wulfram Gerstner (EPFL) and Surya Ganguli

Published in Current Opinions in Neurobiology, 2017 April

 

Ion diffusion may introduce spurious current sources in current-source density

Geir Halnes, Tuomo Mäki-Marttunen, Klas H. Pettersen, Ole A. Andreassen, and Gaute T. Einevoll (NMBU)

Published in Journal of Neurophysiology, 2017 March 15

 

Hebbian plasticity requires compensatory processes on multiple timescales

Friedemann Zenke and Wulfram Gerstner (EPFL)

Published in Philosophical Transactions B, 2017 March 5

 

Recent progress in multi-electrode spike sorting methods

Baptiste Lefebvre, Pierre Yger & Olivier Marre (UPMC)

Published in Journal of Physiology - Paris, 2017 March 2

 

Hopf bifurcation in a nonlocal nonlinear transport equation stemming from stochastic neural dynamics

Audric Drogoul & Romain Veltz (INRIA)

Published in Chaos, 2017 February 22

 

Reproducibility and comparability of computational models for astrocyte calcium excitability

Tiina Manninen (TUT), Riikka Havela (TUT) & Marja-Leena Linne (TUT)

Published in Frontiers in Neuroinformatics, 2017 February 21

 

A framework to reconcile frequency scaling measurements, from intracellular recordings, local-field potentials, up to EEG and MEG signals

Claude Bedard, Jean-Marie Gomes, Thierry Bal & Alain Destexhe (CNRS & EITN)

Published in Journal of integrative Neuroscience

 

Individual brain structure and modelling predict seizure propagation.

Proix T., Bartolomei F., Guye M., Jirsa V. (AMU).

Published in Brain, 2017 February 4

 

Fundamental activity constraints lead to specific interpretations of the connectome

Schuecker J, Schmidt M, van Albada SJ (JUELICH), Diesmann M (JUELICH), Helias M. (JUELICH)

Published in PLoS Computational Biology, 2017 February 1

 

Power-law statistics and universal scaling in the absence of criticality

Touboul, J. and Destexhe, A. (CNRS & EITN)

Published in Physical Review E, 2017 January 31

 

Synaptic correlates of working memory capacity.

Y. Mi, M. Katkov & M. Tsodyks (WEIZMANN).

Published in Neuron, 2017 january 18

 

Impedance spectrum in cortical tissue: Implications for propagation of LFP signals on the microscopic level

Stéphanie Miceli, Torbjørn V. Ness (NMBU), Gaute T Einevoll (NMBU) & Dirk Schubert

Published in eNeuro, 2017 January 16

 

The Virtual Epileptic Patient: Individualized whole-brain models of epilepsy spread

V.K. Jirsa (AMU), T. Proix, D. Perdikis, M.M. Woodman, H. Wang, J. Gonzalez-Martinez, C. Bernard, C. Bénar, M. Guye, P. Chauvel, F. Bartolomei

Published in NeuroImage, 2017 January 15

 

Multiple Choice Neurodynamical Model of the Uncertain Option Task

Andrea Insabato, Mario Pannunzi, Gustavo Deco (UPF)

Published in PLoS Computational Biology, 2017 January 11

 

Local field potentials primarily reflect inhibitory neuron activity in human and monkey cortex

Bartosz Telenczuk (CNRS UNIC EITN), Nima Dehghani, Michel Le Van Quyen, Sydney S Cash, Eric Halgren, Nicholas G Hatsopoulos & Alain Destexhe (CNRS UNIC EITN)

Published in Scientific Reports, 2017 January 11

 

Conference proceedings

Pairwise Ising Model Analysis of Human Cortical Neuron Recordings

Trang-Anh Nghiem, Olivier Marre, Alain Destexhe, Ulisse Ferrari

GSI 2017: Geometric Science of Information

 

Peer-reviewed journal publications

Reproducible neural network simulations: statistical methods for model validation on the level of network activity data

Gutzen R., Von Papen M., Trensch G., Quaglio, Grün S., Denker M.

Published in Frontiers in Neuroinformatics, 2018 December 19

 

Large and fast human pyramidal neurons associate with intelligence

Natalia A Goriounova is a corresponding autor, Djai B Heyer, René Wilbers, Matthijs B Verhoog, Michele Giugliano, Christophe Verbist, Joshua Obermayer, Amber Kerkhofs, Harriët Smeding, Maaike Verberne, Sander Idema, Johannes C Baayen, Anton W Pieneman, Christiaan PJ de Kock, Martin Klein, Huibert D Mansvelder 

Published in eLife, 2018 December 18

 

Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0

Espen Hagen, Solveig Naess, Torbjorn V. Ness, Gaute T. Einevoll

Published in Frontiers in Neuroinformatics, 2018 December 18

 

Dendritic sodium spikes endow neurons with inverse firing rate response to correlated synaptic activity

Tomasz Gorski, Romain Veltz, Mathieu Galtier, Helissande Fragnaud, Jennifer S. Goldman, Bartosz Telenczuk, Alain Destexhe

Published in Journal of Computational Neuroscience, 2018 December 13

 

Alterations in Schizophrenia-associated genes can lead to increased power in delta oscillations

Tuomo Mäki-Marttunen, Florian Krull, Francesco Bettella, Espen Hagen, Solveig Næss, Torbjørn V Ness, Torgeir Moberget, Torbjørn Elvsåshagen, Christoph Metzner, Anna Devor, Andrew G Edwards, Marianne Fyhn, Srdjan Djurovic, Anders M Dale, Ole A Andreassen, Gaute T Einevoll

Published in Cerebral Cortex, 2018 November 22

 

Optimal sequence memory in driven random networks

Jannis Schuecker, Sven Goedeke, and Moritz Helias

Published in Physical Review X 8, 2018 November 14

 

VIOLA - A multi-purpose and web-based visualization tool for neuronal-network simulation output

Johanna Senk, Corto Carde, Espen Hagen, Torsten W. Kuhlen, Markus Diesmann, and Benjamin Weyers

Published in Frontiers in Neuroinformatics, 2018 November 8

 

A simple model for low variability in neural spike trains

Ulisse Ferrari, Stéphane Deny, Olivier Marre, Thierry Mora

Published in Neural Computation, 2018 November 1

 

Neural timing of stimulus events with microsecond precision

Jinhong Luo, Silvio Macias, Torbjorn V. Ness, Gaute T. Einevoll, Kechen Zhang, Cynthia F. Moss

Published in Plos Computational Biology, 2018 October 26

 

A multi-scale layer-resolved spiking network model of resting-state dynamics in macaque visual cortical areas

Schmidt M, Bakker R, Shen K, Bezgin G, Diesmann M, van Albada SJ

Published in Plos Computational Biology, 2018 October 18

 

Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons

Ulisse Ferrari, Stéphane Deny, Matthew Chalk, Gašper Tkačik,Olivier Marre, Thierry Mora

Published in Physical Review, 2018 October 17

 

Whole-brain multimodal neuroimaging model using serotonin receptor maps explains non-linear functional effects of LSD

G. Deco, J. Cruzat, J. Cabral, G.M.Knudsen, R.L. Carhart-Harris, P.C. Whybrow, N.K. Logothetis, and M. L. Kringelbach

Published in Current Biology, 2018 September 27

 

Searching for visual features that explain response variance of face neurons in inferior temporal cortex

Takashi Owaki, Michel Vidal-Naquet, Yunjun Nam, Go Uchida, Takayuki Sato, Hideyuki Câteau, Shimon Ullman, Manabu Tanifuji

Published in Plos One, 2018, September 20

 

Model-Based Spatial Navigation in the Hippocampus-Ventral Striatum Circuit: A Computational Analysis

Ivilin Stoianov, Cyriel Pennartz, Carien Lansink and Giovanni Pezzulo

Published in Plos Computational Biology, 2018 September 19

 

Combining biophysical modeling and deep learning for multielectrode array neuron localization and classification

Alessio P. Buccino, Michael Kordovan, Torbjørn V. Ness, Benjamin Merkt, Philipp D. Häfliger, Marianne Fyhn, Gert Cauwenberghs, Stefan Rotter, and Gaute T. Einevoll

Published in Journal of Physiology, 2018 September 05

 

A neural-level model of spatial memory and imagery

Andrej Bicanski and Neil Burgess

Published in eLife, 2018 September 4

 

Firing-rate models for neurons with a broad repertoire of spiking behaviors

Thomas Heiberg T., Kriener B., Tetzlaff T., Einevol G.T., and Plesser H.E.

Published in Journal of Computational Neuroscience, 2018 August 27

 

Expansion of the effective action around non-Gaussian theories

Tobias Kühn and Moritz Helias

Published in Journal of Physics A: Mathematical and Theoretical, 2018 August 10

 

Real-time visuomotor behavior and electrophysiology recording setup for use with humans and monkeys

Marcel Jan de Haan, Thomas Brochier, Sonja Grün, Alexa Riehle, Frédéric V. Barthélemy

Published in Journal of Neurophysiology, 2018 August 01

 

Eligibility Traces and Plasticity on Behavioral Time Scales: Experimental Support of NeoHebbian Three-Factor Learning Rules

Wulfram Gerstner, Marco Lehmann, Vasiliki Liakoni, Dane Corneil and Johanni Brea

Published in Frontiers in Neural Circuits, 2018 July 31

 

Spiking neurons with short-term synaptic plasticity form superior generative networks

Luziwei Leng, R. Martel, O. Breitwieser, I. Bytschok, W. Senn, J. Schemmel, K. Meier, and M.A. Petrovici

Published in Scientific Reports, 2018 July 13

 

Behavioral context determines network state and variability  dynamics in monkey motor cortex

Alexa Riehle, Thomas Brochier, Martin Nawrot, and Sonja Grün

Published in Frontiers in Neural Circuits, 2018 July 12

 

Criteria on balance, stability, and excitability in cortical networks for constraining computational models

A. Maksimov, M. Diesmann (JUELICH), S.J. van Albada (JUELICH)

Published in Frontiers in Computational Neuroscience, 2018 July 10

 

Phase-lags in large scale brain synchronization: Methodological considerations and in-silico analysis

Spase Petkoski, J. Matias Palva, Viktor K. Jirsa

Published in Plos Computational Biology, 2018 July 10

 

Excitable neuronal assemblies with adaptation as a building block of brain circuits for velocity-controlled signal propagation

Hesam Setareh, Moritz Deger, Wulfram Gerstner (EPFL)

Published in Plos Computational Biology, 2018 July 6

 

Maximum-entropy models reveal the excitatory and inhibitory correlation structures in cortical neuronal activity

Trang-Anh Nghiem, Bartosz Telenczuk, Olivier Marre, Alain Destexhe, and Ulisse Ferrari

Published in Physical Review E, 2018 July 5

 

Human Cortical Pyramidal Neurons: From Spines to Spikes via Models

Guy Eyal (HUJI), Matthijs B. Verhoog, Guilherme Testa-Silva, Yair Deitcher, Ruth Benavides-Piccione, Javier DeFelipe, Christiaan P. J. de Kock, Huibert D. Mansvelder and Idan Segev (HUJI)

Published in Frontiers in Cellular Neuroscience, 2018 June 29

 

h-Type Membrane Current Shapes the Local Field Potential from Populations of Pyramidal Neurons

Torbjørn V. Ness, Michiel W.H. Remme and Gaute T. Einevoll

Published in Journal of Neuroscience, 2018 June 27

 

Investigating large-scale brain dynamics using field potential recordings: analysis and interpretation

Bijan Pesaran, Martin Vinck, Gaute T. Einevoll, Anton Sirota, Pascal Fries, Markus Siegel, Wilson Truccolo, Charles E. Schroeder & Ramesh Srinivasan

Published in Nature Neuroscience, 2018 June 25

 

Spatial cell firing during virtual navigation of open arenas by head-restrained mice

Chen G, King JA, Lu Y, Cacucci F, Burgess N (UCL)

Published in eLife, 2018 June 18

 

Image interpretation above and below the object level

Guy Ben-Yosef, Shimon Ullman

Published in Royal Society Interface Focus, 2018 June 15

 

Single-layer graphene modulates neuronal communication and augments membrane ion currents

N. P. Pampaloni, M. Lottner, M. Giugliano (UA), A. Matruglio, F. D’Amico, M. Prato, J. A. Garrido, L. Ballerini & D. Scaini

Published in Nature Nanotechnology, 2018 June 11

 

Performance Comparison of the Digital Neuromorphic Hardware SpiNNaker and the Neural Network Simulation Software NEST for a Full-Scale Cortical Microcircuit Model

S. J. van Albada (Jülich), A. G. Rowley, J. Senk, M. Hopkins, M. Schmidt, A. B. Stokes, D.R. Lester, M. Diesmann (Jülich), S. B. Furber

Published in Frontiers in Neuroscience, 2018 May 23

 

Extracting orthogonal subject - and condition-specific signatures from fMRI data using whole-brain effective connectivity

SV. Pallarés, A. Insabato, A. Sanjuán, S. Kühn, D. Mantini, G. Deco, and M. Gilson

Published in NeuroImage, 2018 May 22

 

Contribution of the Axon Initial Segment to Action Potentials Recorded Extracellularly

Maria Teleńczuk (CNRS), Romain Brette, Alain Destexhe (CNRS) and Bartosz Teleńczuk (CNRS)

Published in eNeuro, 2018 May 21

 

Framework based on communicability and flow to analyze complex network dynamics

Matthieu Gilson (UPF), Nikos E. Kouvaris, Gustavo Deco (UPF), Gorka Zamora-López (UPF)

Published in Phys.Rev. E, 2018 May 02

 

On a Recursive Construction of Circular Paths and the Search for π on the Integer Lattice ℤ2

Michelle Rudolph-Lilith (CNRS)

Published in Discrete & Computational Geometry, 2018 April

 

Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures

Tiina Manninen, Jugoslava Aćimović, Riikka Havela, Heidi Teppola, Marja-Leena Linne

Published in Frontiers in Neuroinformatics, 2018 April 24

 

A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo

Pierre Yger, Giulia LB Spampinato, Elric Esposito, Baptiste Lefebvre, Stéphane Deny, Christophe Gardella, Marcel Stimberg, Florian Jetter, Guenther Zeck, Serge Picaud, Jens Duebel, Olivier Marre (UPMC)

Published in eLife, 2018 April 19

 

Computational Models for Calcium-Mediated Astrocyte Functions

Tiina Manninen (TUT), Riikka Havela (TUT), Marja-Leena Linne (TUT)

Published in Frontiers in Computational Neuroscience, 2018 April 4

 

Scale-freeness or partial synchronization in neural mass phase oscillator networks: Pick one of two ?

Andreas Daffertshofer, Robert Ton, Bastian Pietras, Morten L. Kringelbach, and Gustavo Deco

Published in Neuroimage, 2018 April 4

 

Multicontact Co-operativity in Spike-Timing–Dependent Structural Plasticity Stabilizes Networks

Moritz Deger, Alexander Seeholzer, Wulfram Gerstner (EPFL)

Published in Cerebral Cortex, 2018 April 1

 

Blindfold learning of an accurate neural metric

Christophe Gardella, Olivier Marre, Thierry Mora

Published in PNAS, 2018 March 27

 

An integrate-and-fire model to generate spike trains with long-range dependence

Alexandre Richard, Patricio Orio, Etienne Tanré (Inria)

Published in Journal of Computational Neuroscience, 2018 March 24

 

Predicting the spatiotemporal diversity of seizure propagation and termination in human focal epilepsy

Timothée Proix, Viktor K. Jirsa (AMU), Fabrice Bartolomei, Maxime Guye, Wilson Truccolo

Published in Nature Communications, 2018 March 14

 

Biophysical network modeling of the dLGN circuit: Effects of cortical feedback on spatial response properties of relay cells

Pablo Martínez-Cañada, Milad Hobbi Mobarhan, Geir Halnes, Marianne Fyhn, Christian Morillas, Francisco Pelayo, Gaute T. Einevoll (NMBU)

Published in PLOS Computational Biology, 2018 February 28

 

Extremely Scalable Spiking Neuronal Network Simulation Code: From Laptops to Exascale Computers

Jakob Jordan, Tammo Ippen, Moritz Helias (JUELICH), Itaru Kitayama, Mitsuhisa Sato, Jun Igarashi, Markus Diesmann (JUELICH), Susanne Kunkel

Published in Frontiers in  Neuroinformatics, 2018 February 16

 

Kramers-Kronig relations and the properties of conductivity and permittivity in heterogeneous media.

Claude Bedard and Alain Destexhe (CNRS & EITN)

Published in Journal of Electromagnetic Analysis and Applications, 2018 February

 

Modeling mesoscopic cortical dynamics using a mean-field model of conductance-based networks of adaptive exponential integrate-and-fire neurons

Yann Zerlaut, Sandrine Chemla, Frederic Chavane, Alain Destexhe (CNRS UNIC EITN)

Published in Journal of Computational Neuroscience, 2018 February

 

Closed-Loop Estimation of Retinal Network Sensitivity by Local Empirical Linearization

Ulisse Ferrari (UMPC), Christophe Gardella, Olivier Marre (UPMC), Thierry Mora

Published in eNeuro, 2018 January 16

 

Toward a unified theory of efficient, predictive, and sparse coding

Matthew Chalk, Olivier Marre (UPMC), Gašper Tkačik

Published in PNAS, 2018 January 2

Peer-reviewed journal publications

Cellular correlates of wakefulness and slow-wave sleep: evidence for a key role of inhibition

Eduarda Susin and Alain Destexhe

Published in Current Opinion in Physiology, 2019 december 27

 

State-dependent mean-field formalism to model different activity states in conductance based networks of spiking neurons

Cristiano Capone, Matteo di Volo, Alberto Romagnoni, Maurizio Mattia, Alain Destexhe

Published in Physical review, 2019 December 23

 

Individual structural features constrain the mouse functional connectome

Francesca Melozzi, Eyal Bergmann, Julie A. Harris, Itamar Kahn, Viktor Jirsa, and Christophe Bernard

Published in PNAS, 2019 december 11

 

Bridging single neuron dynamics to global brain states

Jennifer S. Goldman, Núria Tort-Cole, Matteo Di Volo, Trang-Anh Nghiem, Eduarda Susin, Jules Bouté, Melissa Dali, Mallory Carlu, Tomasz Gorski, and Alain Destexhe

Published in Frontiers in Systems Neuroscience, 2019 December 6

 

Sizing complex networks

Gorka Zamora-López and Romain Brasselet

Published in Communications Physics, 2019 November 14

 

One-shot learning and behavioral eligibility traces in sequential decision making

Marco P Lehmann, He A Xu, Vasiliki Liakoni, Michael H Herzog, Wulfram Gerstner, and Kerstin Preuschoff

Published in eLIFE, 2019 November 11

 

An introduction to probabilistic spiking neural networks: probabilistic models, learning rules, and applications

Hyeryung Jang,  Osvaldo Simeone,  Brian Gardner, and André Grüning

Published in IEEE Signal Processing, 2019 November 5

 

Effective connectivity in autism

Edmund T. Rolls, Yunyi Zhou, Wei Cheng, Matthieu Gilson, Gustavo Deco, and Jianfeng Feng

Published in Autism Research, 2019 October 27

 

Holistic recollection via pattern completion involves hippocampal subfield CA3

Xenia Grande, David Berron, Aidan J. Horner, James A. Bisby, Emrah Düzel, Neil Burgess

Published in the Journal of Neuroscience, 2019 October 9

 

Electrophysiological monitoring of inhibition in mammalian species, from rodents to humans

A. Peyrache and A. Destexhe

Published in Neurobiology of Disease, 2019 October

 

Correlation transfer by layer 5 cortical neurons under recreated synaptic inputs in vitro

Linaro D., Ocker GK, Doiron B., and Giugliano M.

Published in The Journal of Neuroscience, 2019 September 25

 

The hidden repertoire of brain dynamics and dysfunction

Anthony R. McIntosh, and Viktor K. Jirsa

Published in Network Neuroscience, 2019 September 23

 

Unique features of network bursts emerge from the complex interplay of excitatory and inhibitory receptors in rat neocortical networks

Heidi Teppola, Jugoslava Acimovic, and Marja-Leena Linne

Published in Frontiers in Cellular Neuroscience, 2019 September 6

 

Awakening: Predicting external stimulation to force transitions between different brain states

Gustavo Deco, Josephine Cruzat, Joana Cabral, Enzo Tagliazucchi, Helmut Laufs, Nikos K. Logothetis, and Morten L. Kringelbach

Published in PNAS, 2019 August 19

 

Navigating with grid and place cells in cluttered environments

Vegard Edvardsen, Andrej Bicanski, and Neil Burgess

Published in Hippocampus, 2019 August 13

 

Differential neural dynamics underling pragmatic and semantic affordance processing in macaque ventral premotor cortex

Monica Maranesi, Stefania Bruni, Alessandro Livi, Francesco Donnarumma, Giovanni Pezzulo, and Luca Bonini

Published in Scientific reports, 2019 August 12

 

Biophysical psychiatry - How computational neuroscience can help to understand the complex mechanisms of mental disorders

Tuomo Mäki-Marttunen, Tobias Kaufmann, Torbjørn Elvsåshagen, Anna Devor, Srdjan Djurovic, Lars T. Westlye, Marja-Leena Linne, Marcella Rietschel, Dirk Schubert, Stefan Borgwardt, Magdalena Efrim-Budisteanu, Francesco Bettella, Geir Halnes, Espen Hagen, Solveig Næss, Torbjørn V. Ness, Torgeir Moberget, Christoph Metzner, Andrew G. Edwards, Marianne Fyhn, Anders M. Dale, Gaute T. Einevoll, and Ole A. Andreassen

Published in Frontiers in Psychiatry, 2019 August 6

 

Detection and evaluation of bursts in terms of novelty and surprise

Junji Ito, Emanuele Lucrezia, Günther Palm, and Sonja Grün

Published in Mathematical Biosciences and Engineering, 2019 July 31

 

Transmission time delays organize the brain network synchronization

Spase Petkoski and Viktor K. Jirsa

Published in Philosophical Transactions of the Royal Society, 2019 July 22

 

Long-time behavior of a mean-field model of interacting neurons

Quentin Cormier, Etienne Tanré and Romain Veltz

Published in Stochastic Processes and their Applications, 2019 July 22

 

Emergence of hierarchical organization in memory for random material

Michelangelo Naim, Mikhail Katkov, Stefano Recanatesi, and Misha Tsodyks

Published in Scientific reports, 2019 July 18

 

Network analysis of whole-brain fMRI dynamics: A new framework based on dynamic communicability

Matthieu Gilson, Nikos E. Kouvaris, Gustavo Deco, Jean-Francois Mangin, Cyril Poupon, Sandrine Lefranc, Denis Rivière, and Gorka Zamora-Lopez

Published in NeuroImage, 2019 July 12

 

Grand unified theories of the brain need better understanding of behavior: the two-tiered emergence of function

Viktor K. Jirsa, Anthony R. McIntosh and Raoul Huys

Published in Ecological Psychology, 2019 July 11

 

Evaluation of spike sorting algorithms: Simulations and application to human Subthalamic Nucleus recordings

J. Sukiban, N. Voges, T. A. Dembek, R. Pauli, V. Visser-Vandewalle, M. Denker, I. Weber, L. Timmermann, and S. Grün

Published in Neuroscience, 2019 July 9

 

Differential Structure of Hippocampal CA1 Pyramidal Neurons in the Human and Mouse

Ruth Benavides-Piccione, Mamen Regalado-Reyes, Isabel Fernaud-Espinosa, Asta Kastanauskaite, Silvia Tapia-González, Gonzalo León-Espinosa, Concepcion Rojo, Ricardo Insausti, Idan Segev, and Javier DeFelipe

Published in Cerebral Cortex, 2019 July 2

 

The Human Brain Project - Synergy between neuroscience, computing, informatics, and brain-inspired technologies

Katrin Amunts, Alois C. Knoll, Thomas Lippert, Cyriel M. A. Pennartz, Philippe Ryvlin, Alain Destexhe, Viktor K. Jirsa, Egidio D’Angelo, and Jan G. Bjaalie

Published in PLOS Biology, 2019 July 1

 

Optimization of surgical intervention outside the epileptogenic zone in the Virtual Epileptic Patient (VEP)

Sora An, Fabrice Bartolomei, Maxime Guye, and Viktor Jirsa

Published in PLOS Computational Biology, 2019 June 26

 

Second type of criticality in the brain uncovers rich multiple-neuron dynamics

David Dahmen, Sonja Grün, Markus Diesmann, and Moritz Helias

Published in PNAS, 2019 June 25

 

Biologically plausible deep learning - But how far can we go with shallow networks?

Bernd Illing, Wulfram Gerstner, and Johanni Brea

Published in Neural Networks, 2019 June 20

 

Tracking the time course of Bayesian inference with event-related potentials: a study using the central cue posner paradigm

Carlos M. Gómez, Antonio Arjona, Francesco Donnarumma, Domenico Maisto, Elena I. Rodríguez-Martínez, and Giovanni Pezzulo

Published in Frontiers in Psychology, 2019 June 19

 

An architectonic type principle integrates macroscopic cortico-cortical connections with intrinsic cortical circuits of the primate brain

Claus C. Hilgetag , Sarah F. Beul, Sacha J. van Albada, and Alexandros Goulas

Published in Network Neuroscience , 2019 June 7

 

Caching Mechanisms for Habit Formation in Active Inference

D. Maisto, K. Friston, and G. Pezzulo

Published in Neurocomputing, 2019 June 4

 

Suppressive Traveling Waves Shape Representations of Illusory Motion in Primary Visual Cortex of Awake Primate

Sandrine Chemla, Alexandre Reynaud, Matteo di Volo, Yann Zerlaut, Laurent Perrinet, Alain Destexhe, and Frédéric Chavane

Published in Journal in Neuroscience, 2019 May 29

 

Planning at decision time and in the background during spatial navigation

G Pezzulo, F Donnarumma, D Maisto, I Stoianov

Published in Current Opinion in Behavioral Sciences, 2019 May 24

 

The scientific case for brain simulations

Gaute T.Einevoll, Alain Destexhe, Markus Diesmann, Sonja Grun, Viktor Jirsa, Marc de Kamps, Michele Migliore, Torbjorn V; Ness, Hans E. Plesser, and Felix Schurmann

Published in Neuron, 2019 May 22

 

Primate Amygdala Neurons Simulate Decision Processes of Social Partners

Fabian Grabenhorst, Raymundo Báez-Mendoza, Wilfried Genest, Gustavo Deco, Wolfram Schultz

Published in Cell, 2019 May 02

 

Stability of working memory in continuous attractor networks under the control of short-term plasticity

A. Seeholzer, M. Deger, and W. Gerstner

Published in PLOS Computational Biology, 2019 April 19

 

Single-cell and neuronal network alterations in an in vitro model of fragile X syndrome

Anastasiya Moskalyuk ,Sebastiaan Van De Vijver, Peter Verstraelen, Winnok H De Vos, R Frank Kooy, Michele Giugliano

Published in Cerebral Cortex, 2019 April 8

 

Making the Environment an Informative Place: A Conceptual Analysis of Epistemic Policies and Sensorimotor Coordination

Giovanni Pezzulo and Stefano Nolfi

Published in Entropy, 2019 March 30

 

Biologically realistic mean-field models of conductance-based networks of spiking neurons with adaptation

Matteo di Volo, Alberto Romagnoni, Cristiano Capone, Alain Destexhe

Published in Neural Computation, 2019 March 15

 

Computational geometry for modeling neural populations: From visualization to simulation

Marc de Kamps, Mikkel Lepperod, and Yi Ming Lai

Published in PLOS Computational Biology, 2019 March 4

 

A Computational Model of Visual Recognition Memory via Grid Cells

Andrej Bicanski and Neil Burgess

Published in Current Biology, 2019 March 3

 

How does the presence of neural probes affect extracellular potentials?

Alessio Paolo Buccino, Miroslav Kuchta, Karoline Horgmo Jæger, Torbjørn Vefferstad Ness, Pierre Berthet, Kent-Andre Mardal, Gert Cauwenberghs, and Aslak Tveito

Published in Journal of Neural Engineering, 2019 February 26

 

Controlling seizure propagation in large-scale brain networks

Simona Olmi, Spase Petkoski, Maxime Guye, Fabrice Bartolomei, and Viktor Jirsa

Published in PLOS Computational Biology, 2019 February 25

 

Peer-reviewed conference proceedings

Projection-based order reduction of a nonlinear biophysical neuronal network model

M. Lehtimäki, L. Paunonen, and M. Linne

Published in IEEE 58th Conference on Decision and Control (CDC), 2020

 

Coordinated hippocampal-entorhinal replay as structural inference

Talfan Evans and Neil Burgess

Published in Neural Information Processing Systems Conference, 2019 November 20

 

Discovering unexpected local nonlinear interactions in scientific black-box models

Michael Doron, Idan Segev, and Dafna Shahaf

Published in Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery and Data mining (KDD2019), 2019 August 04 - 08

 

Constraints on sequence processing speed in biological neuronal networks

Younes Bouhadjar, Markus Diesmann, Rainer Waser, Dirk J. Wouters, and Tom Tetzlaff

Published in ICONS '19: Proceedings of the International Conference on Neuromorphic Systems, 2019 July 23-25

Peer-reviewed journal publications

Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex

Manninen T, Saudargiene A, Linne M-L

Published in PLOS Computational Biology, 2020 November 10

 

Signature of Consciousness in Brain-Wide Synchronization Patterns of Monkey and Human fMRI Signals

Gerald Hahn,Gorka Zamora-López, Lynn Uhrig, Enzo Tagliazucchi, HelmutLaufs,Dante Mantini, Morten Kringelbach, Bechir Jarraya, Gustavo Deco

Published in NeuroImage, 2020 November 01

 

The covariance perceptron: A new paradigm for classification and processing of time series in recurrent neuronal networks

Matthieu Gilson, David Dahmen, Rubén Moreno-Bote, Andrea Insabato, Moritz Helias

Published in PLOS Computational Biology, 2020 October 12

 

Momentum-dependence in the infinitesimal Wilsonian renormalization group

Moritz Helias

Published in Journal of Physics A: Mathematical and Theoretical, 2020 October 09

 

Brain States and Transitions: Insights from Computational Neuroscience

Morten L. Kringelbach, Gustavo Deco

Published in Cell Reports, 2020 September 08

 

A kernel-based method to calculate local field potentials from networks of spiking neurons

Bartosz Telenczuk, Maria Telenczuk, and Alain Destexhe

Published in Journal of Neuroscience Methods, 2020 July 17

 

Experimental and computational study on motor control and recovery after stroke: towards a constructive loop between experimental and virtual embodied neuroscience

Anna Letizia Allegra Mascaro, Egidio Falotico, Spase Petkoski, Maria Pasquini, Lorenzo Vannucci, Nuria Tort-Colet, Emilia Conti, Francesco Resta, Cristina Spalletti, Shravan T. Ramalingasetty, Emanuele Formento, Emmanouil Agelidis, Camilla H. Blixhavn, Trygve B. Leergaard, MATTEO CALEO, Axel von Arnim, Alain Destexhe, Auke Ijspeert, Silvestro Micera, Cecilia Laschi, Viktor Jirsa, Marc-Oliver Gewaltig and Francesco S. Pavone

Published in Frontiers in Systems Neuroscience, 2020 July 7

 

Modelling unitary fields and the single-neuron contribution to local field potentials in the hippocampus

Maria Telenczuk, Bartosz Telenczuk, and Alain Destexhe

Published in the Journal of Physiology, 2020 June 29

 

The bayesian virtual epileptic patient: a probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread

M.Hashemi, A.N.Vattikonda, V.Sip, M.Guye, F.Bartolomei, M.M.Woodma, and V.K.Jirsa

Published in NeuroImage, Volume 217, 2020

 

Demo code for the kernel method to generate local field potentials from network simulations of spiking neurons

Alain Destexhe

Published on Zenodo, 2020 May 30

 

Conditions for wave trains in spiking neural networks

Johanna Senk, Karolína Korvasová, Jannis Schuecker, Espen Hagen, Tom Tetzlaff, Markus Diesmann, and Moritz Helias

Published in Physical Review Research, 2020 May 14

 

Dynamic coupling of whole-brain neuronal and neurotransmitter systems

Morten L. Kringelbach, Josephine Cruzat, Joana Cabral, Gitte Moos Knudsen, Robin Carhart-Harris, Peter C. Whybrow, Nikos K. Logothetis, and Gustavo Deco

Published in Proceedings of the National Academy of Sciences, 2020 April 28

 

Model-based whole-brain effective connectivity to study distributed cognition in health and disease

Matthieu Gilson, Gorka Zamora-López, Vicente Pallarés, Mohit H. Adhikari, Mario Senden, Adrià Tauste Campo, Dante Mantini, Maurizio Corbetta, Gustavo Deco, and Andrea Insabato

Published in Network Neuroscience, 2020

 

Capacity of the covariance perceptron

David Dahmen, Matthieu Gilson, Moritz Helias

Published in Journal of Physics A: Mathematical and Theoretical, 2020 March 24

 

A mean-field approach to the dynamics of networks of complex neurons, from nonlinear integrate-and-fire to Hodgkin-Huxley models

Mallory Carlu, Omar Chehab, Leonardo Dalla Porta, Damien Depannemaecker, Charlotte Héricé, Maciej Jedynak, Elif Köksal Ersöz, Paolo Muratore, Selma Souihel, Cristiano Capone, Yann Zerlaut, Alain Destexhe, Matteo di Volo

Published in Journal of Neurophysiology, 2020 March 23

 

Cortical state transitions and stimulus response evolve along stiff and sloppy parameter dimensions, respectively

Adrian Ponce-Alvarez, Gabriela Mochol, Ainhoa Hermoso-Mendizabal, Jaime de la Rocha, Gustavo Deco

Published in eLife, 2020 March 17

 

Whole-neuron synaptic mapping reveals spatially precise excitatory/inhibitory balance limiting dendritic and somatic spiking

Lascone DM, Li Y, Sümbül U, Doron M, Chen H, Andreu V, Goudy F, Blockus H, Abbott LF, Segev I, Peng H, Polleux F

Published in Neuron, 2020 March 12

 

Estimation of neural network model parameters from local field potentials (LFPs)

Jan-Eirik W. Skaar, Alexander J. Stasik, Espen Hagen, Torbjørn V. Ness, Gaute T. Einevoll

Published in PLOS Computational Biology, 2020 March 10

 

Low entropy map of brain oscillatory activity identifies spatially localized events: A new method for automated epilepsy focus prediction

Manel Vila-Vidal, Carmen Pérez Enríquez, Alessandro Principe, Rodrigo Rocamora, Gustavo Deco, and Adrià Tauste Campo

Published in NeuroImage, 2020 March 1

 

Beyond the disconnectivity hypothesis of schizophrenia

Edmund T Rolls, Wei Cheng, Matthieu Gilson, Weikang Gong, Gustavo Deco, Chun-Yi Zac Lo, Albert C Yang, Shih-Jen Tsai, Mu-En Liu, Ching-Po Lin, and Jianfeng Feng

Published in Cerebral Cortex, March 2020

 

Natural rhythms of periodic temporal attention

Arnaud Zalta, Spase Petkoski, and Benjamin Morillon

Published in Nature Communications, 2020 February 26

 

The Epileptor model: a systematic mathematical analysis linked to the dynamics of seizures, refractory status epilepticus and depolarization block

Kenza El Houssaini, Christophe Bernard, Viktor K Jirsa

Published in eNeuro, 2020 February 17

 

Advantages and detection of phase coding in the absence of rhythmicity

Daniel Bush, Neil Burgess

Published in Hippocampus, 2020 February 17

 

Cholinergic switch between two types of slow waves incerebral cortex

Trang-Anh Nghiem, Nuria Tort-Colet, Tomasz Gorski, Ulisse Ferrari, Shaylesh Moghimyfiroozabad, Jennifer S. Goldman, Bartosz Telenczuk, Cristiano Capone, Thierry Bal, Matteo di Volo, and Alain Destexhe

Published in Cerebral Cortex, 2020 January 28

 

Fundamental law of memory recall

Michelangelo Naim, Mikhail Katkov, Sandro Romani, and Misha Tsodyks

Published in Physical Review Letters, 2020 January 10

 

Spherical-harmonics mode decomposition of neural field equation

Daniele Daini, Giacomo Ceccarelli, Enrico Cataldo, and Viktor Jirsa

Published in American Physical Society, 2020 January 6

 

Peer-reviewed conference proceedings

Accelerated simulation of a neuronal population via mathematical model order reduction

DM. Lehtimäki, I. Seppälä, L. Paunonen, and M. Linne

Published in IEEE International Conference on Artificial Intelligence Circuits and Systems (AICAS), 2020, pp. 118-122

Peer-reviewed journal publications

Multimodal Representation Learning for Place Recognition Using Deep Hebbian Predictive Coding

Martin J. Pearson, Shirin Dora, Oliver Struckmeier, Thomas C. Knowles, Ben Mitchinson, Kshitij Tiwari, Ville Kyrki, Sander Bohte and Cyriel M.A. Pennartz

Published in Frontiers in Robotics and AI, 2021 December 13

 

Microscopic theory of intrinsic timescales in spiking neural networks

Alexander van Meegen and Sacha J. van Albada

Published in Physical Review Research, 2021 October 28

 

Deep Gated Hebbian Predictive Coding Accounts for Emergence of Complex Neural Response Properties Along the Visual Cortical Hierarchy

Shirin Dora, Sander M. Bohte and Cyriel M. A. Pennartz

Published in Frontiers in Computational Neuroscience, 2021 July 28

 

Is there sufficient evidence for criticality in cortical systems?

Alain Destexhe, Jonathan D. Touboul

Published in eNeuro, 2021 April 02

 

Modulation of intercolumnar synchronization by endogenous electric fields in cerebral cortex

Beatriz Rebollo, Bartosz Telenczuk, Alvaro Navarro-Guzman, Alain Destexhe and Maria V. Sanchez-Vives

Published in Science Advances, 2021 March 03

 

Evidence for spreading seizure as a cause of theta-alpha activity electrographic pattern in stereo-EEG seizure recordings

Viktor Sip, Julia Scholly, Maxime Guye, Fabrice Bartolomei, Viktor Jirsa

Published in PLOS Computational Biology, 2021 February 26

 

Data-driven method to infer the seizure propagation patterns in an epileptic brain from intracranial electroencephalography

Viktor Sip, Meysam Hashemi, Anirudh N. Vattikonda, Marmaduke M. Woodman, Huifang Wang, Julia Scholly, Samuel Medina Villalon, Maxime Guye, Fabrice Bartolomei, Viktor K. Jirsa

Published in PLOS Computational Biology, 2021 February 17

 

Signature of consciousness in brain-wide synchronization patterns of monkey and human fMRI signals

Gerald Hahn, Gorka Zamora-López, Lynn Uhrig, Enzo Tagliazucchi, Helmut Laufs, Dante Mantini, Morten L Kringelbach, Bechir Jarraya, Gustavo Deco

Published in NeuroImage, 2021 February 01

 

Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses

Willem AM Wybo,, Jakob Jordan, Benjamin Ellenberger, Ulisses Marti Mengual, Thomas Nevian, Walter Senn

Published in eLife, 2021 January 26

 

DVEP atlas: An anatomic and functional human brain atlas dedicated to epilepsy patients

Huifang E. Wang, Julia Scholly, Paul Triebkorn, Viktor Sip, Samuel Medina Villalon, Marmaduke M. Woodman, Arnaud Le Troter, Maxime Guye, Fabrice Bartolomei, Viktor Jirsa

Published in Journal of Neuroscience Methods, 2021 January 15

 

Cerebellar Purkinje cells can differentially modulate coherence between sensory and motor cortex depending on region and behavior

Sander Lindeman, Sungho Hong, Lieke Kros, Jorge F. Mejias, Vincenzo Romano, Robert Oostenveld, Mario Negrello, Laurens W. J. Bosman, Chris I. De Zeeuw

Published in Proceedings of the National Academy of Sciences, 2021 January 12

 

Biophysically detailed forward modeling of the neural origin of EEG and MEG signals

Solveig Næss, Geir Halnes, Espen Hagen, Donald J. Hagler, Anders M. Dale, Gaute T. Einevoll, Torbjørn V. Ness

Published in NeuroImage, 2021 January 15

 

Python code for mean-field model of electric-field interactions in cerebral cortex

Telenczuk, Rebollo, Navarro-Guzman, Sanchez-Vives, Destexhe

Published on Zenodo, 2021 January 11

 

Revisiting the global workspace orchestrating the hierarchical organization of the human brain

Gustavo Deco, Diego Vidaurre, Morten L. Kringelbach

Published in Nature Human Behaviour, 2021, January 4

 

Modulation of cortical slow oscillations and complexity across anesthesia levels

Miguel Dasilva, Alessandra Camassa, Alvaro Navarro-Guzman, Antonio Pazienti, Lorena Perez-Mendez, Gorka Zamora-López, Maurizio Mattia, Maria V.Sanchez-Vives

Published in NeuroImage, 2021 January 01

 

Pre-prints: research papers that have not gone through peer-review

Brain Signal Predictions from Multi-Scale Networks using a Linearized Framework

Espen Hagen, Steinn H. Magnusson, Torbjørn V. Ness, Geir Halnes, Pooja N. Babu, Charl Linssen, Abigail Morrison, Gaute T. Einevoll

Published in Physical Review Research, 2022 February 28

 

Covariance-based information processing in reservoir computing systems

Sofía Lawrie, Rubén Moreno-Bote, Matthieu Gilson

Pre-print from 2021, April 30

 

Brain-scale emergence of slow-wave synchrony and highly responsive asynchronous states based on biologically realistic population models simulated in The Virtual Brain

Jennifer S. Goldman, Lionel Kusch, Bahar Hazal Yalcinkaya, Damien Depannemaecker, Trang-Anh E. Nghiem, Viktor Jirsa, Alain Destexhe

Pre-print from 2020, December 28